Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00347 ATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGCGGATAACTCTCTCCTGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGGTATGGTTGTTTTTGAACAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGTAATCTATTGCAATCTTTGTCTAATCTATCCTTATTCAGATTTGTTCGATACTATTGGATACCAAATCTCCATCAGCTGGCCTGTGGATTTTGGTTTAGTGTTGGAATTGTGTGTGTTCTTGGGATCGTGGCTTTAACTTCAGCCCTTGCTTTGGCTGCAGAAGTGTACAACTCAGACCCTTTTAATGGGACGCCCAACGATGCTGCTTCATTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCGGTCAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATAGTATATGGGGCTGCTGCGATTTCTTCTGAAACTAAGAGTGTCTTCCAAGCATATATAGAGGCTGCTGAAGCAATGCTGGAGGATGACGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCTGTGATCAACAAAAATCATTGGAGAAGTTTTCGGTTCTAACGCATTGCAACACAGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTGACTCTGCTGGTGTGTTAGAAAGGGCGTACTGTACTGAAACACGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATCCCTTCTACTCTGATAGCCGATTCTGCTGCTGCCGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGCGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAAGATTCCATTCTTTGTGGCTGCACCCTTGACTTCCATAGACTTATCCCTTTCTTCTGGAGAAGAAATTGTTATAGAGGAAAGATCTCCCAAGGAGTTGTTGAACTCTCGTGGAGGTCTCGGTGAGCAAGTCGCGGCATTTGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACAGAAAAGGGAGTCATCACAAAGGCGGCGGGTTCTGAATCTTTCGACATAAAGGAGTTTGTTCGAAAGACAGAGGGGGCTCGTGCATAG 1257 45.43 MALDSNNGGEVGADNSLLSICYKRGSLRLLDQVWLFLNRGNSLWKLSTWISRTQQMDGNLLQSLSNLSLFRFVRYYWIPNLHQLACGFWFSVGIVCVLGIVALTSALALAAEVYNSDPFNGTPNDAASFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVYGAAAISSETKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYICDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALDSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAAFGIAVWNPAFDVTPAHLISGIITEKGVITKAAGSESFDIKEFVRKTEGARA 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3810851 3815836 - Lsi06G003470.1 Lsi06g00347 665077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00347 418 SUPERFAMILY NagB/RpiA/CoA transferase-like 98 399 IPR037171 -
Lsi06g00347 418 Pfam Initiation factor 2 subunit family 127 396 IPR000649 GO:0044237
Lsi06g00347 418 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 101 410 - -
Lsi06g00347 418 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 100 397 IPR005251 -
Lsi06g00347 418 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 89 406 IPR005251 -
Lsi06g00347 418 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 101 397 IPR011559 GO:0044249
Lsi06g00347 418 Gene3D - 188 395 IPR042529 -
Lsi06g00347 418 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 101 410 - -
Lsi06g00347 418 Gene3D - 101 187 IPR027363 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00347 Lsi-Chr6:3810851 Lsi09g00815 Lsi-Chr9:9337291 2.27E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00347 K08963 - csv:101210526 595.89