Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00351 ATGGCCCTCTCCATTTCTTCCACTGCTCTCTCAACTTTACCAATCAGAGAATCATTTCACAGAGGACATTTTCCGGGAAAATTCTCAAATTATAAGCTCCGGCGAGACTGCTCCGATTTGAAGGCTGCAAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATCGACCCCTCTGGTTCCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTTCTGACCCAGAGCTACTAAAATGGTTCGCGCAAGCGGAGCTAATGCACGCGAGATGGGCAATGCTAGCCGTGGCCGGAATCCTACTACCGGAATGGTTCGAAAGCTTAGGACTAATACAGAATTTCTCGTGGTACGACGCCGGATCGCGAGAGTATTTTACAGATCCGACGACATTGCTGGTGGCGCAATTGGCATTGATGGGGTGGGTTGAGGGGCGGCGGTGGGCAGACATGGTCAACCCGGGCAGCGTTGACGTTGACCTAAAGCTGCCCCACAAAAAGAAGGCAAAGCCAGACGTGGGCTACCCGGGTGGGTTTTGGTTTGACCCGATGATGTGGGGCAGGGGGTCGCCGGAGCCGGTCATGGTGTTGCGGACTAAAGAGATAAAGAATGGGCGGCTGGCCATGCTGGCGTTTGTTGGACTGTGGTTTCAGGCTATTTATACTGGCCAAGGGCCGCTTGAGAATCTCGCCGCCCACACCACTGCATCATTTCCAGAGCGGCAGACCGACGGAGACATGTATCGAACGGCGGCGAAGCGTCTGATCGTCGGCGTGACCTCCGATAGAAATGGCATTCACCGTCTCAGGTTTCCATCACCTTCCACCTTCCTCGACCATTCTTCCTTCTCCACAGCTACCAATTCACAAGTATTTCCTAATTCTCAAATCCCCAATCAACACCATATTCGTCAAGAAACTCCTACTTCTTCTGATTCTGCATCTTCTTCATCTTCTTCTTGGTCCACATCAACTTCGGGCGAAGAAACCCGAAGCCATGAGAATCGGCGGCCGAGAGTTGAGTATCAAGAGGAGCAGGCTCGCGTCCTCCAGGCTGCTCTTTCCCATGTGGTGAAGCTAGGATGGACTGAGGCCGCTATGATTGCTGGTGCAAGGGATATTGGCATGTCACCTTCCATTGTTGGATCCTTTGCCAGGAAGGAAGCCGAATTAGTTGAGGTGTATACTCGTGTTTTCTTGATTTCTTTCACTTTCCCCATTTACATCTTGGACAACCCATTTGAATTAGTCATATGTATTACGTACATACTGGCACTGTGGTTAATAAGCATGAAGTTCTTGACCTTGCCTCGGCTCATCGATCTAATTGAGGCAGAAGAAGGCCTTAAGAATTTGATACTTCGTGAACGTATTTACAAGCTTGTTAGAGCTTGTCTAGAAATGCAAGCTCCCTTCATGTCAAAATGGGCTCAGGCTCTCAGTATCCAGGCACAACCAGCAAATCTAGCAACTAGCTTTAAACAACGGGCGACGCTCGTTGATGAGATTTGGCATGCTGCTGGCGGTGACACCTCTGACATTGATTGGTACGTCAAGCGTACTATTTTGGGAGGAATATACTCAGCTACTGAGATATACATGCTCACTGATAGTTCTCCAGATTTTCAGGATACATGGACTTTCTTGGACAATCGTTTGAAAGATGCGTTCGATATAAAGAAAACCGTCCAAGAGGCAAAGTATCTGGCAGAAGCTGTAGGTGCTGGAATGGGGAACTCCTTTCAGGGATTTGTTGGAAAATTTTTCCAGAGATAG 1818 50.06 MALSISSTALSTLPIRESFHRGHFPGKFSNYKLRRDCSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFTDPTTLLVAQLALMGWVEGRRWADMVNPGSVDVDLKLPHKKKAKPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHTTASFPERQTDGDMYRTAAKRLIVGVTSDRNGIHRLRFPSPSTFLDHSSFSTATNSQVFPNSQIPNQHHIRQETPTSSDSASSSSSSWSTSTSGEETRSHENRRPRVEYQEEQARVLQAALSHVVKLGWTEAAMIAGARDIGMSPSIVGSFARKEAELVEVYTRVFLISFTFPIYILDNPFELVICITYILALWLISMKFLTLPRLIDLIEAEEGLKNLILRERIYKLVRACLEMQAPFMSKWAQALSIQAQPANLATSFKQRATLVDEIWHAAGGDTSDIDWYVKRTILGGIYSATEIYMLTDSSPDFQDTWTFLDNRLKDAFDIKKTVQEAKYLAEAVGAGMGNSFQGFVGKFFQR 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3836682 3845566 - Lsi06G003510.1 Lsi06g00351 665081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00351 605 TIGRFAM diverge_rpsU: rpsU-divergently transcribed protein 454 578 IPR012762 GO:0006744|GO:0008289
Lsi06g00351 605 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 248 IPR001344 GO:0009765|GO:0016020
Lsi06g00351 605 MobiDBLite consensus disorder prediction 316 356 - -
Lsi06g00351 605 SUPERFAMILY Chlorophyll a-b binding protein 57 249 - -
Lsi06g00351 605 Gene3D Tetracycline Repressor, domain 2 452 571 - -
Lsi06g00351 605 MobiDBLite consensus disorder prediction 316 342 - -
Lsi06g00351 605 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Lsi06g00351 605 Pfam COQ9 500 575 IPR013718 -
Lsi06g00351 605 Gene3D Chlorophyll a/b binding protein domain 68 252 - -
Lsi06g00351 605 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00683 Lsi-Chr4:6266236 Lsi06g00351 Lsi-Chr6:3836682 3.71E-91 dispersed
Lsi06g00351 Lsi-Chr6:3836682 Lsi06g01458 Lsi-Chr6:25126453 9.63E-53 dispersed
Lsi06g00351 Lsi-Chr6:3836682 Lsi02g00081 Lsi-Chr2:694390 6.86E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00351 K08908 K18587 csv:101211178 510.76