Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00359 ATGACGAAGCCGTCGTCCCCTCACAAATCCGCCGCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAAGGAGTGCGGCGCCGGAAATGGGGCAAATGGGTTTCAGAAATTCGTCTCCCCAACAGCCGTGAGCGGATCTGGTTAGGCTCTTATGATTCAGCTGAGAAAGCGGCGCGTGCATTCGACGCGGCTCTGTTTTGCCTACGTGGCCGTTCCGCTCGTTTCAATTTCCCTGATAACCCACCGGAAATTGCCGGTGCCAGTTTACTCTCCCGAACAGAGATTCAATCCGTCGCCGCCCAATTCGCTAACTCCGACCCACCGCCATCATCGGAATGTACACGACCCACCGTGGATTCGCCATCGCCGTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAGTGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTATTATAATGAAATGTTTATTAATGGTTCTTCTTCAACAACAACTCCTTTTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTAATCAAGACTCATCATTCCTCTGGAATTTCTGA 630 50.79 MTKPSSPHKSAAAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRTEIQSVAAQFANSDPPPSSECTRPTVDSPSPSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPYYNEMFINGSSSTTTPFFDYGDENFDAITTNQDSSFLWNF 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3917885 3918514 - Lsi06G003590.1 Lsi06g00359 665089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00359 209 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Lsi06g00359 209 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Lsi06g00359 209 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Lsi06g00359 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 12 209 - -
Lsi06g00359 209 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Lsi06g00359 209 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Lsi06g00359 209 MobiDBLite consensus disorder prediction 103 127 - -
Lsi06g00359 209 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Lsi06g00359 209 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Lsi06g00359 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 209 - -
Lsi06g00359 209 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Lsi06g00359 209 PIRSF PTI6 177 205 IPR017392 GO:0003700
Lsi06g00359 209 PIRSF PTI6 3 148 IPR017392 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00359 Lsi-Chr6:3917885 Lsi08g00823 Lsi-Chr8:16615372 1.66E-42 dispersed
Lsi08g00417 Lsi-Chr8:11626324 Lsi06g00359 Lsi-Chr6:3917885 3.21E-27 dispersed
Lsi04g01372 Lsi-Chr4:21523641 Lsi06g00359 Lsi-Chr6:3917885 1.00E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25471 PF00847 AP2 8.30E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00359 - - csv:101213288 319.701