Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00370 ATGGGGAGAGAACTGCAGAAGCAGCCGCAGCAAGAGATGGCCTCCGCGGTAGAGCAGTTGCTTGCCGTGAATCCTTACAATCCCGACATTCTCCCCGATCTCGAAAACTACGTAAACGAGCAGGTCTCGTCAGAAACGTACAGTTTAGATGCCAATCTATGCCTTCTTCGCCTCTACCAGTTTGAGCCAGAGAGAATGAGTACCCAAATTGTGGCTCGCATCCTGGTCAAGGCTCTGATGGCAATGCCAGCTCCGGATTTCAGCCTGTGTCTCTTTTTAATTCCAGAACGAGTGACTGGAAAGTTCCGTCAATTCTGGGATGAAGCTGCCAAGAATCGTCACATAGTTGAAGCTGTGCCAGGTTTTGAGCAAGCAATTCAAGCTTATGCAGTCCATGTTCTTTCCTTAACTTATCAAAAGGTTCCTAGATCTGTACTTGCGGAGGCAATCAATATTGAGGGCCTGTCTTTGGACAAATTCCTTGAGCACCAAGTTGCAAACTCTGGTTGGATTCTTGAGAAAGGTCATGGGAAAGGCCAACTTATTGTTATACCACCCAACGAATTCAACCATCCTGAACTAAAGAAGAAATCCTCCGACAGCATTCCCTTGGATCACATTACTCGCATCTTTCCGATTCTTGGCTAA 648 46.76 MGRELQKQPQQEMASAVEQLLAVNPYNPDILPDLENYVNEQVSSETYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPERVTGKFRQFWDEAAKNRHIVEAVPGFEQAIQAYAVHVLSLTYQKVPRSVLAEAINIEGLSLDKFLEHQVANSGWILEKGHGKGQLIVIPPNEFNHPELKKKSSDSIPLDHITRIFPILG 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4095210 4098424 + Lsi06G003700.1 Lsi06g00370 665100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00370 215 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 8 215 IPR009374 GO:0003743|GO:0005737|GO:0005852
Lsi06g00370 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K 8 215 - -
Lsi06g00370 215 SUPERFAMILY Winged helix DNA-binding domain 120 212 IPR036390 -
Lsi06g00370 215 Pfam CSN8/PSMD8/EIF3K family 100 177 IPR033464 -
Lsi06g00370 215 SUPERFAMILY ARM repeat 10 118 IPR016024 -
Lsi06g00370 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 8 215 IPR009374 GO:0003743|GO:0005737|GO:0005852
Lsi06g00370 215 Gene3D ARM repeat; domain 1 8 130 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00370 K15028 - csv:101214255 409.838