Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00378 ATGGAGGGGAGTTCCGGCGGAGGTGGAGTGGGAATTGGGGGAACGACGGCGGGTGGTGTGGCGGCGGGAGGAGTGGCAGGCGGTGGCGGAGGGAGTGACGTGGAGCTGATGTGCAAAACGCTGCAGGTGGAACACAAGCTGTTCTACTTCGATCTGAAGGAGAATCCCAGAGGTCGATATCTGAAGATTTCAGAGAAGACATCGGCTACAAGGTCAACGATCATTGTTCCTTTCTCTGGGATTCCATGGTTCTTAGATCTCTTCAATTACTATATCAATTCTGATGATCCAGAGGTGTTTTACTTTGACATTGGCGAGAATAGGAGGGGTCGTTTCTTGAAGACAGGATGGTGCACATCAGGCATTAGGATAGTCTGGAGTGAAGGCTGCCATTGTGTGGCAACAGATTACAACCACCTCAGGCTCCATTGCCCCTTCATACCAGATATCCCAGCAACCCCTCTTTTGATCAATTTGGAGCTGCATCTTCATGTGTCAGTTCACGTATCTGAAGCTTCAGTTAGTAGAAACCGCAGCACCATTATCGTTCCCGCCGGAAGCAACCGGGATGAGGGATGGTCTGCATTTCGAAACATTTTGGCAGAGATCAATGAAGCATCTAGGCTTTTCATACTGCCCAATCAGGAAAATTCTGAACATTCAGAACGTCTTGTCGGACTTTCAGACGATGTAGGAGCTGGCTTCATATCAGGTCATAGTAGTCAACCTGGTCCAACCTCTGACTTGAATGTAGATAGACAAGTAGACTTGTCAGCTCAAGATGAATTGGGGAATCTGGGTGTTTCGAAAGTTATCCGAGCTGATCAGAAGAGATTCTTTTTCGATCTTGGAAGTAACAACCGGGGTCATTTCTTGAGGATTTCTGAGGTTGCAGGGGCAGATCGTTCTTCAATCATTCTCCCATTGTCAGGTCTTAAGCAATTCTATGAAATAGTAGGACATTTTGTGGAGATCACCAAAGACAGGATTGAAGGAATGACAGGTGTGAATGTTCGAACCGTGGATCCGCCTCAGAGATGA 1041 47.45 MEGSSGGGGVGIGGTTAGGVAAGGVAGGGGGSDVELMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGIPWFLDLFNYYINSDDPEVFYFDIGENRRGRFLKTGWCTSGIRIVWSEGCHCVATDYNHLRLHCPFIPDIPATPLLINLELHLHVSVHVSEASVSRNRSTIIVPAGSNRDEGWSAFRNILAEINEASRLFILPNQENSEHSERLVGLSDDVGAGFISGHSSQPGPTSDLNVDRQVDLSAQDELGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGADRSSIILPLSGLKQFYEIVGHFVEITKDRIEGMTGVNVRTVDPPQR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4179434 4184337 - Lsi06G003780.1 Lsi06g00378 665108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00378 346 Gene3D - 257 330 - -
Lsi06g00378 346 Gene3D - 28 98 - -
Lsi06g00378 346 Gene3D - 165 208 - -
Lsi06g00378 346 PANTHER PUR-TRANSCRIPTIONAL ACTIVATOR 26 115 IPR006628 GO:0000977|GO:0032422
Lsi06g00378 346 PANTHER PUR-TRANSCRIPTIONAL ACTIVATOR 168 333 IPR006628 GO:0000977|GO:0032422
Lsi06g00378 346 Pfam PurA ssDNA and RNA-binding protein 39 93 IPR006628 GO:0000977|GO:0032422
Lsi06g00378 346 Pfam PurA ssDNA and RNA-binding protein 260 322 IPR006628 GO:0000977|GO:0032422
Lsi06g00378 346 PANTHER PURINE-RICH BINDING PROTEIN-ALPHA, ISOFORM B 26 115 - -
Lsi06g00378 346 PANTHER PURINE-RICH BINDING PROTEIN-ALPHA, ISOFORM B 168 333 - -
Lsi06g00378 346 SMART pur 266 327 IPR006628 GO:0000977|GO:0032422
Lsi06g00378 346 SMART pur 35 96 IPR006628 GO:0000977|GO:0032422
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00378 K21772 PURA; transcriptional activator protein Pur-alpha - ming:122089884 394.815
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g5 . Blo03g01398 . . . . Bma14g00742 Bma07g01371 Cmo10g00829 Cmo11g00777 Cma10g00802 . . . . . Cpe18g00278 Bhi02g01439 Tan09g0742 . . . . . . . . . . . . . Cone5ag1410 . . Lsi06g00378 . . . . . Bda07g00772 Bda09g00340 . Bpe11g00947 Bma07g00328 . . . . Cma11g00768 . . . . Cpe04g00992 . . . . . . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . Csa01g03033 Chy02g01313 Cme02g00345
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003968 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00378 Lsi_Chr06 FPKM 18.184124 14.648916 10.377833 10.542377 7.991827 8.369722 6.896545 12.999624 13.677922 12.259798