Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00444 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTCCAATTGTGGAAGGAGATGCCGTTGCTCCACCAACCGATCCTGAAGTGGTGGTGGAAGATGATTATTCTGATGAAGAGATCGACGTGGATGAACTTGAGAGGAGGATGTGGAGGGATAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATCGATATTGTGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAGTATATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCTGAGAAGGGAAAACCAGTAACCGGGGCATCGGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTATCAGGCAGACAATGCGATTCCCGGACGAAATGATGGGTGTAATTCAATCGGTCCAACCCCGCACACTCTGCAGGAACTTCAGGATACCACCCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCACCATGGTGGCCTACTGGAGTTGAGGAATGGTGGCCTCAGCTCGGGTTGCCGAAGGACCAAGGTCCTCCACCGTACAAGAAGCCTCACGATTTGAAGAAAGCGTGGAAAGTCGGTGTTTTGACTGCAGTCATTAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGACAGTCCAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCCCGGGAGCTTTATCCCGACTCTTGCCCGCCTTTGTCTTCCGGTGGGGGTAGTGGATCTTTGGTCATTAACGATTGCAGTGAATATGATGTAGAAGGTGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGTAAACCTGATAACCATAGCTCATTCAACTTGGGAATGGACAGAATGAGGGAACGGGTGCCCCTTCGACAACCATCTTATGCAATCAAAGGAGAGGTTCCCACAAACTTGGATTTCATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATTTACACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTTCGTCTCGGGTTTAACGACAGGACGTCCAGAGACAATCATCAGTTGACCTGTCCATATAAAACTTCTTCAGAATTCAGTGGCTCAAATTTTCATGTCAACGAGGTTAAACCAGTTATCTTCCCTCAGTCGTTTGCCCAGCCCAAGTCAGCTCCACCCCCGGTCAGCTCGGTTCCATCATCCTTCGACCTGTCCACTTTAGGTGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCGATCTATGACACCAACATCCAAGGCAACAAGAACAACTTAAACACAGGTAACGGTGCCACCACGGAGAACCAAAATCTCCCTCAGTTAAAGATCCAACCTCAACAAGATGAATACTTCCGCAATCAAGGTCTAATGATCGAGGGAAACTTCTTTGAGGGGTCGAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTTGAAAACAACCACCATCGGCACAACAATAACAACAGCAACAACAACAATTTCCACTTAATGTTTGGCTCTCCATTTGATTTGTCAACCTTCGACTACAAAGAAGAAGTACCCGGAGTAGCAGCCATCGATACACTGTCGAAACAGCAGGACATTCCATTATGGTATCATTGA 1890 46.4 MMMMFNEMGFCDDMDFLSAPIVEGDAVAPPTDPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGMDRMRERVPLRQPSYAIKGEVPTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCPYKTSSEFSGSNFHVNEVKPVIFPQSFAQPKSAPPPVSSVPSSFDLSTLGVPEDGQKLISELMSIYDTNIQGNKNNLNTGNGATTENQNLPQLKIQPQQDEYFRNQGLMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHRHNNNNSNNNNFHLMFGSPFDLSTFDYKEEVPGVAAIDTLSKQQDIPLWYH 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4847898 4849787 - Lsi06G004440.1 Lsi06g00444 665174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00444 629 MobiDBLite consensus disorder prediction 334 353 - -
Lsi06g00444 629 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 628 IPR006957 GO:0005634
Lsi06g00444 629 MobiDBLite consensus disorder prediction 336 353 - -
Lsi06g00444 629 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Lsi06g00444 629 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Lsi06g00444 629 Coils Coil 48 68 - -
Lsi06g00444 629 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Lsi06g00444 629 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Lsi06g00444 629 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 628 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00444 Lsi-Chr6:4847898 Lsi08g00615 Lsi-Chr8:14472422 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25474 PF04873 EIN3 3.50E-129 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00444 K14514 - csv:101206055 1187.94