Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00445 ATGTTCGGGATGGCGGCAGAGAAGGTGGCAACGACCGTGGCGGCGGTGGCAGTGGCTGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTTTTGCATAGAGTTGGAGGAGGAAAATATACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCATGAGCACTTTTATGTTGGTGATTGGCTCTATTTTGGGTTCGATAAACACATCTACAACGTGTTGGAAGTGAACAAGACGAGCTACGAGAGTTGTAACGAGAAGGATTTCATTTTCAACATAACAAAAGGAGGGAGAGATGTATTCAATTTAACAGAAGCAAAATCATACTACTTTCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTTCTGTTTTTGTTGAAGAGTCTCCTCCAATTTTACCACCCAATTTACCTAATATTTCTCCATCTTTACAACCATTATTATTGCCTTTCTCCCTCTTGCTATTCATCTAA 486 40.74 MFGMAAEKVATTVAAVAVAGWLLFGVEGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYESCNEKDFIFNITKGGRDVFNLTEAKSYYFLSGRGFCFQGMKVSVFVEESPPILPPNLPNISPSLQPLLLPFSLLLFI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4871787 4872807 + Lsi06G004450.1 Lsi06g00445 665175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00445 161 PANTHER EARLY NODULIN-LIKE PROTEIN 20 14 146 - -
Lsi06g00445 161 Gene3D - 32 134 IPR008972 -
Lsi06g00445 161 PANTHER BLUE COPPER PROTEIN 14 146 IPR039391 GO:0009055
Lsi06g00445 161 Pfam Plastocyanin-like domain 43 124 IPR003245 GO:0009055
Lsi06g00445 161 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055
Lsi06g00445 161 SUPERFAMILY Cupredoxins 33 130 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00445 - - - csv:116401709 241.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01524 Lsi-Chr3:26250248 Lsi06g00445 Lsi-Chr6:4871787 2.40E-31 dispersed
Lsi03g01525 Lsi-Chr3:26258571 Lsi06g00445 Lsi-Chr6:4871787 5.71E-20 dispersed
Lsi06g00445 Lsi-Chr6:4871787 Lsi09g00359 Lsi-Chr9:3710471 1.19E-12 dispersed
Lsi06g00445 Lsi-Chr6:4871787 Lsi02g02708 Lsi-Chr2:33448037 1.79E-14 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00157 . 11 139 Phytocyanin Superfamily AT1G48940 53.3 7.6e-37 150.6
Lsi03g01524 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 5.0e-38 154.5
Lsi08g01251 CCT 72 227 Phytocyanin Superfamily AT2G25060 56.1 1.6e-45 179.5
Lsi03g01524 . 13 178 Phytocyanin Superfamily AT5G15350 52.1 1.2e-47 186.4
Lsi08g01251 CCT 69 229 Phytocyanin Superfamily AT4G31840 55.3 1.4e-46 183.0
Lsi02g00157 . 8 121 Phytocyanin Superfamily AT3G18590 61.2 3.6e-37 151.8
Lsi02g00157 . 8 121 Phytocyanin Superfamily AT3G18590 61.2 3.6e-37 151.8
Lsi02g00157 . 11 139 Phytocyanin Superfamily AT1G48940 53.3 7.6e-37 150.6
Lsi08g01251 CCT 67 234 Phytocyanin Superfamily AT5G25090 50.9 1.2e-37 153.3
Lsi08g01251 CCT 72 227 Phytocyanin Superfamily AT2G25060 56.1 1.6e-45 179.5
Lsi08g01251 CCT 69 229 Phytocyanin Superfamily AT4G31840 55.3 1.4e-46 183.0
Lsi03g01524 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 5.0e-38 154.5
Lsi03g01524 . 13 178 Phytocyanin Superfamily AT5G15350 52.1 1.2e-47 186.4
Lsi10g01112 . 19 229 Phytocyanin Superfamily AT1G08500 58.0 4.7e-63 238.0
Lsi06g00445 . 30 135 Phytocyanin Superfamily AT2G27035 58.5 1.4e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00445 Lsi_Chr06 FPKM 7.832016 8.938958 7.200679 6.664782 6.015326 5.664439 5.43333 10.343471 10.111641 9.046716