Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00445 ATGTTCGGGATGGCGGCAGAGAAGGTGGCAACGACCGTGGCGGCGGTGGCAGTGGCTGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTTTTGCATAGAGTTGGAGGAGGAAAATATACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCATGAGCACTTTTATGTTGGTGATTGGCTCTATTTTGGGTTCGATAAACACATCTACAACGTGTTGGAAGTGAACAAGACGAGCTACGAGAGTTGTAACGAGAAGGATTTCATTTTCAACATAACAAAAGGAGGGAGAGATGTATTCAATTTAACAGAAGCAAAATCATACTACTTTCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTTCTGTTTTTGTTGAAGAGTCTCCTCCAATTTTACCACCCAATTTACCTAATATTTCTCCATCTTTACAACCATTATTATTGCCTTTCTCCCTCTTGCTATTCATCTAA 486 40.74 MFGMAAEKVATTVAAVAVAGWLLFGVEGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYESCNEKDFIFNITKGGRDVFNLTEAKSYYFLSGRGFCFQGMKVSVFVEESPPILPPNLPNISPSLQPLLLPFSLLLFI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4871787 4872807 + Lsi06G004450.1 Lsi06g00445 665175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00445 161 PANTHER EARLY NODULIN-LIKE PROTEIN 20 14 146 - -
Lsi06g00445 161 Gene3D - 32 134 IPR008972 -
Lsi06g00445 161 PANTHER BLUE COPPER PROTEIN 14 146 IPR039391 GO:0009055
Lsi06g00445 161 Pfam Plastocyanin-like domain 43 124 IPR003245 GO:0009055
Lsi06g00445 161 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055
Lsi06g00445 161 SUPERFAMILY Cupredoxins 33 130 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01524 Lsi-Chr3:26250248 Lsi06g00445 Lsi-Chr6:4871787 2.40E-31 dispersed
Lsi03g01525 Lsi-Chr3:26258571 Lsi06g00445 Lsi-Chr6:4871787 5.71E-20 dispersed
Lsi06g00445 Lsi-Chr6:4871787 Lsi09g00359 Lsi-Chr9:3710471 1.19E-12 dispersed
Lsi06g00445 Lsi-Chr6:4871787 Lsi02g02708 Lsi-Chr2:33448037 1.79E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00445 - - csv:116401709 241.891