Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00459 ATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGGTTTTCGAATCGGTCATCAAGTCAAGTTGTTGAGAAAGACAAGTTCGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCGTAGCAAGTTTACGGGAAGAAGATTATATTACGAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAAGGATAATCTTTCCATGGTTCAGTGGCCACTTTTTCTTCTTGCCAGCAAGATATTTCTAGCTAAGGATATTGCTGTTGAAAGACGAGTTTCGCAAGACAAGTTGTGGGAGCGTATTTCAAGAGATGACTATATGAAATATGCAGTACAGGAATGTTACCACGCCATTAAGCTTATCTTAACAGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACATTCAAGCTAGTATAGCAAACAATTCCATTCTAAATGACTTCCAACTAAATAAGCTGCCACTTGTGATTACAAGAGTAACTGCTTTGACGGGTATTCTGAAAGAGCCAGAAACTTCAGAGCTGAAAAAAGGGGTTGTTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCACGATATCCTTTTCGGTCACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGATGGTCGCTTGTTTACAAAGTTAAATTGGCCCAAAGATCCAGAATTGAAGTCACAAGTCAAAAGATTGCATTCCCTGTTAACTATTAAAGATTCTGCTTCAAATATTCCCGTTAATCTTGAGGCACAACGGAGACTGCAATTCTTTACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACCTGTTCGTCAGATGCTTTCCTTTAGTGTATTCACTCCGTATTATTCTGAGACGGTGCTCTATAGTATGGGGGAACTCCTGAAGAAAAATGAGGATGGGATAACAACCTTGTTTTACTTGCAAAAAAATTATCCAGATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCAAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAACCCTAATGACATCCTTGCACTGCGATTTTGGGCCTCTTATCGGGGACAAACGTTAGCAAGAACAGTTCGTGGAATGATGTACTATAGGAAAGCTCTTATGCTGCAGACTTATTTAGAGAGAGGAACTTATGGAGATTTGGAAGCTGCGATTCCTTGTACTGATGCTACTGATACTCGGGGTTTCAATTTATCTCCTGTAGCACATGCACAGGCAGATCTTAAATTTACATATGTTGTGACGTGTCAGATATATGGAAGACAAAGACAACAACAAAAACCTGAGCCTATTGACATTGCATTGCTTATGCAAAGAAATGAAGCCCTTCGTGTTGCCTACATCGATTATATTGAAACCCTAAAGGATGGTAAGGTGCACAGAGAATTTTACTCAAAGCTTGTAAAGGCTGATATCAATGGAAATGATAAGGAGATATATTCAATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGGAAGCCTGAGAATCAAAATCATGCCATTGTTTTTACTCGTGGAAATGCTGTTCAGACTATTGATATGAATCAGGATAATTACTTTGAAGAAGCATTGAAGATGAGAAATCTTCTTGAGGAATTTGGTCGTGATCATGGTATTCGTCCTCCTACCATACTGGGTGTCAGGGAGCATGTATTTACAGGGAGTGTTTCATCTCTTGCTTCATTCATGTCAAGTCAAGAAACTAGTTTTGTGACTATTTGTCAGCGTGTTCTGGCAAATCCCTTGAAAGTGCGTATGCATTATGGCCATCCAGATGTTTTTGATAGGGTTTTCCATCTAACACGAGGTGGCATCAGCAAGGCTTCCCGTGTTATCAACATTAGTGAAGATGTCTTTGCAGGTATCCTCTTTTACTTGGTCGGTAAAGGACGAGATGTTGGTCTTAACCAGATTACTATTTTCGAAAGAAAGCTTGCCGGTGGTAATGGAGAACAAGTTCTTAGCCGTGATGTATATAGGCTTGGCCAACTGTTTGATTTTTTCCGGATGATGTCATTCTGTTTCACCACAGTTGGCTACTACTTTTGTACTATGGCACTATTTGGAGTTGGTGAAACCATTGAAGATAGAGTTAATATTACAGATATTACGGCATTGTCAGCTGCTTTGAATGCACAGTTTTTCATCCAAGTTGGTATCTGCACTGCCGTGCCTATGATCTTGGCATTCATATTGGAGCAAGGTTTCTTCAGGACTATTGTCACTTTCATAACCACGCAGCTTCAGCTTTGTTCTGTCTTCTTCACATTCTCTCTTGGTATAAAAGCTCACTATTTTGGCCGAACAATTCTTCATGGCGGTGCAAAGTATCATGCAACTGGAAGGGGATTTATGGTTCGCCATATCAAATTCTCTGAAAATTACAGATTGTACTCCCGCAGCCATTTTGTTAGAGGATTGGAAGTTGTGCTTCTGTTGGTTGTATACATGGCCTATGGATATAGTTCAGGTGGTTCATTAGGATACATTCTTGTAACTCTTAGCACTTGGTTCATGGCAATATCTTGGCTTTTTGCTCCCTCTCTATTCAATCCATCTGGGACCGTGGAGGATTTTAGGGAATGGACCAATTGGCTTTTTTACCGAGGTGGAGTTGGTGTTAAGGGTGAAGAAAGTTGGGAAGCATGGTGGGACTCAGAACTGGTATATGGATTCTCCTGGATTGTGTTAGCTGGGCTTATAGTTCTTTTCAAGGTGTTTACCTTCAGCCAGAAAACGACTGTCTATTTTCAGCTTTCGTTGCGATTTATTCGAGGTCTTTCTTTCCTTTTTACGTTGGCTGGCCTGGCAGTTGCGGTTGCTATTTCGGATTTGTCAATGCCTGATGTATTTGCTTGCATCGTGGCATTTGTACCTACCGGATGGGGCATTCTTTCTATTGCAGCAGCTTGGAAACCTTTAATAAAGAAACTTGGACTCTGGAAATCCGTTTGCTTAATTGCTCGACTGTACGATGCGGGAATGGGGATGCTCATCTTTATCCCCATTGCATTCCTTTCATGGTTTCCAATTGTGTCGACGTTACAAAATCTTCTTATGTTCAACCAGGCTTTCTGTTGA 3132 40.68 MDTLHVPLQDRLGFSNRSSSQVVEKDKFDAARFSPFWNEIVASLREEDYITNLEMELLQMPKNKDNLSMVQWPLFLLASKIFLAKDIAVERRVSQDKLWERISRDDYMKYAVQECYHAIKLILTELLVGEGRMWVERVFEDIQASIANNSILNDFQLNKLPLVITRVTALTGILKEPETSELKKGVVKAVQDLYDVVHHDILFGHKRGHYETWNILVKARNDGRLFTKLNWPKDPELKSQVKRLHSLLTIKDSASNIPVNLEAQRRLQFFTNSLFMVMPTPKPVRQMLSFSVFTPYYSETVLYSMGELLKKNEDGITTLFYLQKNYPDEWKNFLARIGQDENEVDPESFDNPNDILALRFWASYRGQTLARTVRGMMYYRKALMLQTYLERGTYGDLEAAIPCTDATDTRGFNLSPVAHAQADLKFTYVVTCQIYGRQRQQQKPEPIDIALLMQRNEALRVAYIDYIETLKDGKVHREFYSKLVKADINGNDKEIYSIKLPGDPKLGEGKPENQNHAIVFTRGNAVQTIDMNQDNYFEEALKMRNLLEEFGRDHGIRPPTILGVREHVFTGSVSSLASFMSSQETSFVTICQRVLANPLKVRMHYGHPDVFDRVFHLTRGGISKASRVINISEDVFAGILFYLVGKGRDVGLNQITIFERKLAGGNGEQVLSRDVYRLGQLFDFFRMMSFCFTTVGYYFCTMALFGVGETIEDRVNITDITALSAALNAQFFIQVGICTAVPMILAFILEQGFFRTIVTFITTQLQLCSVFFTFSLGIKAHYFGRTILHGGAKYHATGRGFMVRHIKFSENYRLYSRSHFVRGLEVVLLLVVYMAYGYSSGGSLGYILVTLSTWFMAISWLFAPSLFNPSGTVEDFREWTNWLFYRGGVGVKGEESWEAWWDSELVYGFSWIVLAGLIVLFKVFTFSQKTTVYFQLSLRFIRGLSFLFTLAGLAVAVAISDLSMPDVFACIVAFVPTGWGILSIAAAWKPLIKKLGLWKSVCLIARLYDAGMGMLIFIPIAFLSWFPIVSTLQNLLMFNQAFC 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5103937 5153388 - Lsi06G004590.1 Lsi06g00459 665189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00459 1043 Pfam 1,3-beta-glucan synthase component 718 900 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Lsi06g00459 1043 Pfam 1,3-beta-glucan synthase component 257 703 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Lsi06g00459 1043 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 906 1042 - -
Lsi06g00459 1043 PANTHER BNAC03G35120D PROTEIN 1 906 - -
Lsi06g00459 1043 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 1 906 - -
Lsi06g00459 1043 PANTHER BNAC03G35120D PROTEIN 906 1042 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00459 Lsi-Chr6:5103937 Lsi06g01620 Lsi-Chr6:26512684 0 dispersed
Lsi06g00459 Lsi-Chr6:5103937 Lsi06g00462 Lsi-Chr6:5209926 0 proximal
Lsi02g02615 Lsi-Chr2:32585815 Lsi06g00459 Lsi-Chr6:5103937 9.55E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00459 K11000 - csv:101216435 1823.52