Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00460 GATATGCTTGGTAGAAGTCGCCATCAAGGGAAAACATCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCGTAGTTTCCATCGTTTATGGATATTTTTGGTTATGATGTTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACACTGCTGGACGTTCTGAGTATTGGTCCGACATATGTTCTAATGAAGTTAATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACCCTACTTCAAGGCGTCTTGCTGTTTCTCGGATTTTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTGCTGGCCTCTTGTTCGCTTTTTCAAGTGGATGTGTCAGGAACGGTACTATGTTGGACGTGGAATGTATGAGAGGACTACTGACTTTATCAAGTAA 591 39.09 DMLGRSRHQGKTSFVEHRTFLHLYRSFHRLWIFLVMMFQALTIVAFNNGSFNMKTLLDVLSIGPTYVLMKLIESVLDILMMYGAYPTSRRLAVSRIFLRFLWFSIASALITFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLSILMHIPACRLLMNQCDCWPLVRFFKWMCQERYYVGRGMYERTTDFIK 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5158570 5159729 - Lsi06G004600.1 Lsi06g00460 665190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00460 196 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 4 196 - -
Lsi06g00460 196 PANTHER BNAA01G32440D PROTEIN 4 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00460 Lsi-Chr6:5158570 Lsi06g01620 Lsi-Chr6:26512684 7.42E-46 dispersed
Lsi06g00460 Lsi-Chr6:5158570 Lsi06g00462 Lsi-Chr6:5209926 2.82E-119 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00460 K11000 - csv:101216435 365.155