Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00460 GATATGCTTGGTAGAAGTCGCCATCAAGGGAAAACATCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCGTAGTTTCCATCGTTTATGGATATTTTTGGTTATGATGTTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACACTGCTGGACGTTCTGAGTATTGGTCCGACATATGTTCTAATGAAGTTAATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACCCTACTTCAAGGCGTCTTGCTGTTTCTCGGATTTTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTGCTGGCCTCTTGTTCGCTTTTTCAAGTGGATGTGTCAGGAACGGTACTATGTTGGACGTGGAATGTATGAGAGGACTACTGACTTTATCAAGTAA 591 39.09 DMLGRSRHQGKTSFVEHRTFLHLYRSFHRLWIFLVMMFQALTIVAFNNGSFNMKTLLDVLSIGPTYVLMKLIESVLDILMMYGAYPTSRRLAVSRIFLRFLWFSIASALITFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLSILMHIPACRLLMNQCDCWPLVRFFKWMCQERYYVGRGMYERTTDFIK 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5158570 5159729 - Lsi06G004600.1 Lsi06g00460 665190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00460 196 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 4 196 - -
Lsi06g00460 196 PANTHER BNAA01G32440D PROTEIN 4 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00460 K11000 CALS; callose synthase [EC:2.4.1.-] - csv:101216435 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00460 Lsi-Chr6:5158570 Lsi06g01620 Lsi-Chr6:26512684 7.42E-46 dispersed
Lsi06g00460 Lsi-Chr6:5158570 Lsi06g00462 Lsi-Chr6:5209926 2.82E-119 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g115 . . . . . . Bma14g00713 . Cmo10g01015 Cmo11g00826 . . . . . . . Bhi02g01627 Tan09g0908 . . Hepe09g1050 . . . . . . . . . . . . . Lsi06g00460 . . . . . . . . . . . . . . Cma11g00821 . . . . Cpe04g00948 . . . . . . . Cla03g01336 Cam03g1419 Cec03g1452 Cco03g1444 Clacu03g1439 Cmu03g1995 Cre03g1670 . . Chy02g01392 Cme02g00458
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00826 . 13 1126 Cell Wall Biosynthesis AT5G17420 79.0 0.0e+00 1788.9
Lsi01g01851 . 9 1050 Cell Wall Biosynthesis AT5G17420 67.7 0.0e+00 1430.2
Lsi02g02575 . 11 1082 Cell Wall Biosynthesis AT5G17420 66.7 0.0e+00 1429.5
Lsi08g00202 . 1 1109 Cell Wall Biosynthesis AT5G17420 61.8 0.0e+00 1407.1
Lsi09g01795 . 2 1039 Cell Wall Biosynthesis AT5G17420 65.4 0.0e+00 1399.4
Lsi01g01120 . 1 1236 Cell Wall Biosynthesis AT5G17420 56.7 0.0e+00 1352.8
Lsi04g02141 . 177 1183 Cell Wall Biosynthesis AT5G17420 60.6 0.0e+00 1276.5
Lsi02g00827 . 497 1470 Cell Wall Biosynthesis AT5G17420 58.7 0.0e+00 1204.9
Lsi06g00462 . 1 1803 Cell Wall Biosynthesis AT3G07160 72.4 0.0e+00 2691.4
Lsi06g01620 . 7 1756 Cell Wall Biosynthesis AT3G07160 56.1 0.0e+00 2012.7
Lsi06g00459 . 1 1042 Cell Wall Biosynthesis AT3G07160 69.0 0.0e+00 1491.5
Lsi10g00726 . 25 744 Cell Wall Biosynthesis AT3G07160 61.6 8.4e-259 891.3
Lsi02g02614 . 3 579 Cell Wall Biosynthesis AT3G07160 51.5 5.6e-162 569.7
Lsi06g00461 . 2 272 Cell Wall Biosynthesis AT3G07160 71.8 5.1e-115 413.7
Lsi06g00460 . 4 196 Cell Wall Biosynthesis AT3G07160 67.5 2.3e-70 265.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00460 Lsi_Chr06 FPKM 0.699804 0.914166 2.513629 3.03663 1.612679 2.121548 1.566067 2.965069 3.564422 3.649457