Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00461 ATGTTGAAGCGAAAAAAAGTCTTTGCAACCCTGAAAGTATTAGCAGTGATACTGGAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCGTATAATATTATTCCGTTAGATGCTCCTTCTGTGACAAATGCTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCCGCAGAATTTTCTATTCCGGAGACTAGGAGTCCTGATATACTTGACTTTCTACACTTCGTCTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTCGAAGAAACTGAACCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTACGTTAAATGGTGTGAACATTTATGCATCCAACCTGTATGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTATACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTTCCAGAATGCTTATGCTACATATTTCACCATATGGTTCGGGAAATGGATGAGGTATTGAGGCATCAGATTGCGCAGCCAGCCAAGAGCTGCGAGTCTAAAGATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTACGAGGTTCTAGCTGCGGAAGCTGCAAACAATAATAATGGGCAGGCACCACATTCTGGATGGAGAAACTATGATGATTTT 816 41.91 MLKRKKVFATLKVLAVILEQLSDAIPEEMKRLMELDAAMTEDLIAYNIIPLDAPSVTNAIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETRSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETEPKLDAAAVEGVFKKSLENYVKWCEHLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVREMDEVLRHQIAQPAKSCESKDGVSFLDQVICPLYEVLAAEAANNNNGQAPHSGWRNYDDF 272
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5162790 5179004 - Lsi06G004610.1 Lsi06g00461 665191
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00461 272 SMART FKS1_dom1_2 177 272 IPR026899 -
Lsi06g00461 272 PANTHER BNAC03G35120D PROTEIN 2 272 - -
Lsi06g00461 272 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 179 272 IPR026899 -
Lsi06g00461 272 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 2 272 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00461 Lsi-Chr6:5162790 Lsi06g01620 Lsi-Chr6:26512684 5.07E-73 dispersed
Lsi06g00461 Lsi-Chr6:5162790 Lsi06g00462 Lsi-Chr6:5209926 8.17E-174 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00461 K11000 - csv:101216435 505.753