Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00462 ATGACACGAGTCGAGGAGTTGTGGGAGCGCTTAGTTCGAGCAGCCTTAAGAAGGGATAGAATTGGTATTGATGCTTATGGACGCCCTGAGAGTGGCATTGCCGGGAATGTACCATCTTCACTTGCAAACAATAGGGACATTGATGAAATCTTGAGAGCTGCAGATGAAATTCAAGATGAAGATCCCAATATCGCGAGAATATTATGTGAGCATGCGTATTCACTTGCGCAAAACCTAGATCCTAATAGTGAAGGAAGAGGTGTTTTGCAATTCAAAACTGGTTTGATGTCTGTCATTAAGCAAAAGCTAGCCAAGAGGGAGGGTGTATCCATAGATAGAAGCCAGGACATTACTCGGTTACTGGAGTTCTACAAACTATACCGAGAGAAAAATAATGTAGATAAGCTTCGGGAAGATGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGGTAATCTTGGAGAGTTGGAACGAAAAACGTTGAAGCGAAAAAAAGTTTTTGCAACCCTGAAAGTATTAGCAATGGTACTGGAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATCGGATGCAGCAATGACAGAGGACCTAATTGCATATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGCTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAATTGCCCGCAGAATTTTCTGTTCCGGAGACTAGAAGTCCTGATATAGTAGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGCCTTCGTATTCCTGAAGAAACGGAACCAAAATTGGATGAAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTACGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCGGTTAGCAAGGAAAAGAAGCTATTGTTTATTTCCTTATACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTTCCAGAATGCTTATGCTACATATTTCACCATATGGTTCGGGAAATGGATGAGGTATTGAGGCATCAAATTGCGCAGCCGGCCAAGAGCTGCGAGTCTAAAGATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCTGCGGAAGCCGCAAACAATAATAATGGGCGGGCACCACATTCTGCATGGAGAAACTATGACGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACCCCAAAGTCAAAGAATATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGTTTATGATGTTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACACTGCTGGAAGTTCTGAGTCTTGGTCCAACATTTGTTGTGATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCAAGGCGACTTGCTGTTTCTCGAATATTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTCAATAACATTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCGAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATCGGAATATATGGTGGTGTGCAGCTTTGTCTTAGCATACTCATGCGTATACCTGCTTGCCATCTTTTAACGAATCGATGTGATCGGTGGCCTCTTGTTCGTTTTATCAAGTGGATGCGTCAGGAACGGTACTATGTTGGGCGTGGGATGTATGAGAGGACTACTGACTTTATCAAGTACATGCTTTTGTGGATTATCATTCTGGGTGGAAAATTTGCATTTGCCTATTTCCTTCAGATCAAGCCTCTTGTTGAACCTACCAGGCTTATTGTAAATATGAGAGATATAAGATATTCATGGCATGACTTTGTGTCTAAAAATAATCACAATGCTTTGACTATTCTTAGCTTATGGGCCCCTGTGGTTGCTATTTACATCTTGGACGTTCATGTGTTCTATACTGTTATATCGGCCATTTGGAGTTTCTTAATTGGGGCAAGAGATCGTCTTGGAGAGATTAGATCATTGGAAGCCCTACATAAGCTGTTCGAGCAGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTACAAGACAGGTTTTCAAATCGGTCTTCAAGTCAGGTTGTTGAGAAAGACAAGTTCGATGCTGCCCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAAGGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGCCAGCAAGATATTTCTAGCTAAGGATATTGCTGTTGAGAGACGAGATTCGCAAGCCGAGTTGTGGGAGCGTATTTCAAGAGATGACTATATGAAATATGCAGTACTGGAATGTTACCATGCCATTAAGCTTATCTTAACGGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACATTCAAGCTAGTATAGAAAACAATTCCATTCTAAATGACTGCGAGCTCAATAAGCTGCCACTTGTGATTACAAGAGTAACTGCATTGACGGGTATTCTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGGGGCTGTTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATATCCTTTCTGGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGCTTGTTTACAAAGTTAAATTGGCCCAAAGATCCAGAATTGAAGTCACAAGTCAAAAGATTGCATTCCTTGTTAACCATTAAAGATTCAGCTACAAATATTCCAGTTAATCTTGAGGCCCGACGGAGACTGCAATTCTTCACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACCTGTTCGTCAGATGCTTTCCTTCAGTACGTGGTTCATTGTAGGTCGCGGAGTCGGGTTGCCATCAGTGCACCTTGCTGATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAACCCTAATGACATCCTTGCACTGCGATTTTGGGCCTCTTATCGGGGACAGACGTTAGCAAGAACTGATTTGGAAGCTGCCATTCCTTCTACTGATGCTACTGATACTCGAGGCTTTGATTTATCTCCCGAAGCACGTGCACAGGCAGACCTTAAATTTACATATGTTGTGACGTGTCAGATATATGGAAGACAAAGAGAACAACAAAAACCTGAGGCCTCTGACATTGCACTGCTTATGCAAAGAAATGAAGCCCTTCGTGTTGCGTACATCGATGATATTGAAACCCTAAAGGATGGTAAGGTGCACAAAGAATTTTACTCAAAGCTTGTAAAGGCTGATATCAATGGAAAAGATAAGGAGATATATTCAATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGAAAGCCTGAGAATCAAAATCATGCTATTGTTTTTACTCGTGGAAATGCTGTTCAGACAATTGACATGAATCAGGATAATTACTTTGAAGAAGCATTGAAGATGAGAAATCTTCTTGAGGAATTTGGTTGTGATCATGGTATTCGTCCTCCTACCATACTGGGGGTCAGGGAACATGTATTTACGGGGAGTGTTTCATCTCTTGCTTCATTCATGTCAAATCAAGAAGCTAGTTTTGTGACTCTTGGTCAGCGTGTTCTGGCAAATCCCTTGAAAGTGCGTATGCATTATGGCCATCCAGATGTTTTTGATAGGGTTTTTCATCTAACACGAGGTGGCATCAGCAAGGCCTCCCGTGTTATCAACATTAGCGAAGATATCTTTGCAGGATTTAATACAACATTGAGGCAAGGGAACGTTACTCATCATGAGTATATTCAGGTCGGTAAAGGACGAGATGTTGGTCTTAACCAGATTGCTCTTTTCGAAGGGAAGGTTGCTGGTGGTAATGGAGAACAAGTTCTTAGCCGTGATGTATATAGGCTTGGCCAACTGTTTGATTTTTTCCGGATGATGTCATTCTATTTCACCACTGTCGGCTACTACTTTTGTACTATGGCACTGTCTGGAGTTGGTGAAACGATTGAAGATAGAGCTAATATTACAGATAATACGGCATTGTCAGCTGCTTTGAATACACAGTTCCTCATCCAAATTGGTATCTTCACTGCCGTGCCTATGATCTTGGGATTCATATTGGAGCAAGGTTTCTTCAGGGCTATTGTCAGCTTCATAACCATGCAGCTTCAGCTTTGTTCTGTCTTCTTCACATTCTCTCTTGGCACAAAAACTCACTATTTTGGCCGAACAATTCTTCATGGTGGTGCGAAGTATCATGCAACTGGAAGGGGATTTGTGGTTCGCCATATCAAATTCTCTGAAAATTACAGATTGTACTCCCGCAGCCATTTTGTTAAAGGATTGGAAGTTGTGCTTCTGTTGGTTGTATACATGGCCTATGGATATAGTTCAGGTGGTTCATTAGCATACATCCTTGTAACTCTTAGCAGTTGGTTCATGGCAATATCTTGGCTTTTTGCTCCCTATCTGTTCAATCCATCTGGGTTTGAGTGGCAGAAGACCGTGGAGGATTTCAGGGAATGGACCAATTGGCTTTTTTACCGTGGTGGAATTGGTGTTAAGGGTGAAGAAAGTTGGGAAGCGTGGTGGGACTCAGAACTGGTATATGGGTTCTCCTGGATTGTGTTAGCTGGGCTTATAGTTCTCTTCAAGGTGTTTACCTTCAGCCAGAAGATGACTGTCAATTTTCAGCTTTTGTTGCGATTTATCCAAGGTCTTTCTTTCCTTTTGACGCTGGCTGGCCTGGCAGTTGCGGTTGCTATTACAGATTTGTCACTGCCTGATGTATTTGCTTGCATCTTGGCATTTGTACCTACAGGATGGGGCATTCTTTCTATTGCATCAGCTTGGAAACCTTTAATAAAGAAACTGGGACTCTGGAAATCCATTCGCTCAATTGCTCGGCTGTATGATGCTGGGATGGGGATGCTGGTCTTTATCCCCATTGCATTCCTTTCATGGTTTCCATTTGTATCGACATTCCAAACTCGACTTATGTTCAACCAGGCTTTTAGTCGAGGGCTCGAGATCTCTCTAATTCTTGCTGGAAACAATCCCAACACTGCCCTATGA 5412 41.63 MTRVEELWERLVRAALRRDRIGIDAYGRPESGIAGNVPSSLANNRDIDEILRAADEIQDEDPNIARILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAKREGVSIDRSQDITRLLEFYKLYREKNNVDKLREDEMKLRESGAFSGNLGELERKTLKRKKVFATLKVLAMVLEQLSDAIPEEMKRLMESDAAMTEDLIAYNIIPLDAPSMTNAIGSLAEVQAAVSALKYFSGLPKLPAEFSVPETRSPDIVDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRIPEETEPKLDEAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVREMDEVLRHQIAQPAKSCESKDGVSFLDQVICPLYEVLAAEAANNNNGRAPHSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKNMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLFMMFQALTIVAFNNGSFNMKTLLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRLAVSRIFLRFLWFSIASASITFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLSILMRIPACHLLTNRCDRWPLVRFIKWMRQERYYVGRGMYERTTDFIKYMLLWIIILGGKFAFAYFLQIKPLVEPTRLIVNMRDIRYSWHDFVSKNNHNALTILSLWAPVVAIYILDVHVFYTVISAIWSFLIGARDRLGEIRSLEALHKLFEQFPGAFMDTLHVPLQDRFSNRSSSQVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNKGNLPMVQWPLFLLASKIFLAKDIAVERRDSQAELWERISRDDYMKYAVLECYHAIKLILTELLVGEGRMWVERVFEDIQASIENNSILNDCELNKLPLVITRVTALTGILKEPETSELEKGAVKAVQDLYDVVHHDILSGDKRGHYETWNILVKARNEGRLFTKLNWPKDPELKSQVKRLHSLLTIKDSATNIPVNLEARRRLQFFTNSLFMVMPTPKPVRQMLSFSTWFIVGRGVGLPSVHLADEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTDLEAAIPSTDATDTRGFDLSPEARAQADLKFTYVVTCQIYGRQREQQKPEASDIALLMQRNEALRVAYIDDIETLKDGKVHKEFYSKLVKADINGKDKEIYSIKLPGDPKLGEGKPENQNHAIVFTRGNAVQTIDMNQDNYFEEALKMRNLLEEFGCDHGIRPPTILGVREHVFTGSVSSLASFMSNQEASFVTLGQRVLANPLKVRMHYGHPDVFDRVFHLTRGGISKASRVINISEDIFAGFNTTLRQGNVTHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDVYRLGQLFDFFRMMSFYFTTVGYYFCTMALSGVGETIEDRANITDNTALSAALNTQFLIQIGIFTAVPMILGFILEQGFFRAIVSFITMQLQLCSVFFTFSLGTKTHYFGRTILHGGAKYHATGRGFVVRHIKFSENYRLYSRSHFVKGLEVVLLLVVYMAYGYSSGGSLAYILVTLSSWFMAISWLFAPYLFNPSGFEWQKTVEDFREWTNWLFYRGGIGVKGEESWEAWWDSELVYGFSWIVLAGLIVLFKVFTFSQKMTVNFQLLLRFIQGLSFLLTLAGLAVAVAITDLSLPDVFACILAFVPTGWGILSIASAWKPLIKKLGLWKSIRSIARLYDAGMGMLVFIPIAFLSWFPFVSTFQTRLMFNQAFSRGLEISLILAGNNPNTAL 1803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5209926 5295751 - Lsi06G004620.1 Lsi06g00462 665192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00462 1803 Pfam 1,3-beta-glucan synthase component 1099 1642 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Lsi06g00462 1803 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 338 445 IPR026899 -
Lsi06g00462 1803 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 1648 1802 - -
Lsi06g00462 1803 SMART FKS1_dom1_2 336 448 IPR026899 -
Lsi06g00462 1803 Gene3D - 33 186 IPR023175 -
Lsi06g00462 1803 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 1 1120 - -
Lsi06g00462 1803 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 1128 1647 - -
Lsi06g00462 1803 PANTHER BNAC03G35120D PROTEIN 1 1120 - -
Lsi06g00462 1803 PANTHER BNAC03G35120D PROTEIN 1648 1802 - -
Lsi06g00462 1803 PANTHER BNAC03G35120D PROTEIN 1128 1647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00459 Lsi-Chr6:5103937 Lsi06g00462 Lsi-Chr6:5209926 0 proximal
Lsi06g00460 Lsi-Chr6:5158570 Lsi06g00462 Lsi-Chr6:5209926 2.82E-119 proximal
Lsi06g00462 Lsi-Chr6:5209926 Lsi06g00464 Lsi-Chr6:5333886 0 proximal
Lsi06g00461 Lsi-Chr6:5162790 Lsi06g00462 Lsi-Chr6:5209926 8.17E-174 tandem
Lsi02g00751 Lsi-Chr2:6900250 Lsi06g00462 Lsi-Chr6:5209926 0 transposed
Lsi04g01949 Lsi-Chr4:26606444 Lsi06g00462 Lsi-Chr6:5209926 1.92E-56 transposed
Lsi04g01950 Lsi-Chr4:26612851 Lsi06g00462 Lsi-Chr6:5209926 0 transposed
Lsi06g01620 Lsi-Chr6:26512684 Lsi06g00462 Lsi-Chr6:5209926 1.27E-180 transposed
Lsi10g00726 Lsi-Chr10:10105574 Lsi06g00462 Lsi-Chr6:5209926 0 transposed
Lsi10g00728 Lsi-Chr10:10112010 Lsi06g00462 Lsi-Chr6:5209926 3.42E-94 transposed
Lsi10g00897 Lsi-Chr10:13292767 Lsi06g00462 Lsi-Chr6:5209926 0 transposed
Lsi11g01625 Lsi-Chr11:24589546 Lsi06g00462 Lsi-Chr6:5209926 1.41E-08 transposed
Lsi02g02614 Lsi-Chr2:32580556 Lsi06g00462 Lsi-Chr6:5209926 2.36E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00462 K11000 - csv:101216435 3378.19