Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00469 ATGGAAGACGAAGCTTCATCCAGCTTCCTTCCCCATATCAAGACTCCTATCCTAACAGACGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCGAAGCGGCCGAGATTAGATAACGAGCTTAATGATGTTGTCGCCGTCGGGAAATTCAAAGGCGTTGTGCCGCAACAGAATGGCCGTTGGGGAGCGCAGATTTACGCGAATCACCAGAGGATTTGGCTCGGTACCTTCAAAACAGAGAAAGACGCTGCCATGGCTTACGACAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCAAACAATCGAGGAGCCTAATTTTCAAATCAAATTCTCCACAGATGCCGTTCTGAGTATGATCAAAGACGGATCGTATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCACAAATTCGCGACTCGGATTTACAGAATCCTCAAAATTTCGACAATGGCGATGGCGATAGCCTTTTCTCTTGCAGTCATCTATTCCAGAAAGAATTAACACCGAGCGACGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACACTTCCCATACATCAGCGAAAGCGCAGAGGAGAACGGCGACGACATTGAAATCCTCTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGGTACTGTTACTGGAGAAGTAGCCAGAGTTTCGTCTTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATTATCACGTTTTACACATACGAGAGCTACGGAAGAGACGAAAATGGCGGAACATTAAACTTCATAGACGTAATCTATAAGAAATCGGAGGATGAACAGAGCGAGAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGAAAATATTGCAGAGCGAATTAGGGCAAAATCAGGGGGAGGACTGTGAGAAGAAGAAGAAGAAGGAGATTTTAAGCATTGAATTGAACCCTAATGATAAAAATGTTGGGGCAAAGCGAATTAGGCTATTTGGAGTGCATATTGATTGA 1074 44.97 MEDEASSSFLPHIKTPILTDEVSDSNFTYYAIPEAKRPRLDNELNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRQTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIRDSDLQNPQNFDNGDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEILFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESYGRDENGGTLNFIDVIYKKSEDEQSESSCLAAEKESVKNEKILQSELGQNQGEDCEKKKKKEILSIELNPNDKNVGAKRIRLFGVHID 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5435377 5436450 + Lsi06G004690.1 Lsi06g00469 665199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00469 357 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Lsi06g00469 357 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 356 IPR044800 GO:0003700
Lsi06g00469 357 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700|GO:0006355
Lsi06g00469 357 ProSiteProfiles B3 DNA-binding domain profile. 176 289 IPR003340 GO:0003677
Lsi06g00469 357 CDD B3_DNA 174 281 IPR003340 GO:0003677
Lsi06g00469 357 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Lsi06g00469 357 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Lsi06g00469 357 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Lsi06g00469 357 SMART B3_2 176 285 IPR003340 GO:0003677
Lsi06g00469 357 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Lsi06g00469 357 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 19 356 - -
Lsi06g00469 357 SUPERFAMILY DNA-binding pseudobarrel domain 174 268 IPR015300 -
Lsi06g00469 357 Gene3D - 165 297 IPR015300 -
Lsi06g00469 357 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00469 Lsi-Chr6:5435377 Lsi06g01166 Lsi-Chr6:21911166 6.77E-108 dispersed
Lsi06g00469 Lsi-Chr6:5435377 Lsi05g00069 Lsi-Chr5:1432708 2.31E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25476 PF02362 B3 1.40E-26 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00469 K09287 - csv:101219913 645.58