Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00472 ATGAGGCCTGTCAAACGGGAACCCACCGCCACCAGCCGTAGTAATCGGAGTAGAGGTGGCGGCGATGGCGGCGCTGTCGATGCTGCGAGTATAAGGGATATTAAGCGGGAGAGGGTTGCTCGGGAGCGAGAGAACTCCGGCGAGGACAACACGACTGAAGAAGTGGGTCAGCAAGACTTGACGAAGCGGCGGGTCCTTCGCTCTCGGTACCTCGCGGTCATTCATGAGATTAGTGAAAGAAGAGAGGATTTGTCGAAGGATCTGGATAAGTTTAATGTTATCATCAATGAAGTGGAAAAGTTGCACGAGCAAGTACAAAAGCCAAGGGAACAAGTTGCAGATGCAGAAGCGTTGCAAGATATTGCAAACTCCCTCGTGACCTCTATTAGGTCCCAATCAAATGAAGGTGTTACTCCATCAGATTTTGTTAGTTGTCTGCTCAGAGAGTTTGCTGACATTAACACTAGCATAAAATCTGAAGAACATGACCTGGTTTCTGTCAGTTGGAAAGATATTGGACGCAGTGTTTCGTCTATTTTCATGAATGGCCATGGATGCCGCACCATGCTTGGACCTATGAGCAATCAGTTGAAGCAGCGAAAGACTAATAATATTTCCAGGAAACGTTCCAGGCCTACTGAGAGTTCTAGACCTGCAGAGGTTGAAGATAATGGGTCTGAAGCAAAAACAGACACAGATAAGAACATGGGCATCATGTTTGGAATTTTGAGGAGGAATAAAACCGTTAAACTAGAACATTTGATATTGAATAGAAAGTCTTTTGCACAGACAGTAGAGAATTTATTTGCTCTATCCTTTCTGGTTAAGGATGGTCGGGCTGAGATAACTATTGATAAAAATGGTTCTCATTTTGTGTCACCGAAGAATGCCCCTGCCCATAGTGCCATTATGTCACATGAAGTTAATTACAGTCATTTTGTATTCAGATTCGATTACAAGGATTGGAAGCCAATGGTGGATATGGTACCAGTTGGAGAAGAGCTGATGCCCCACAGGAACTCTCTGAACTCAGTGCAGGTGTCCCAAGAAGAAGCAACAGCAGATGATGCTGAAGCAGCAGCCTTACCTACTACACCAATCCGAAAGCTGTCGAGAAATCGAGGTTTAGTTATGCAAACTGTTGTTGAAGATTCACCTGATAATGACACTCATTCAGGAGCAACTGCAATTTTGAGGTGCAAAAGAAAGCTTAGTCAAGGTTAG 1224 44.61 MRPVKREPTATSRSNRSRGGGDGGAVDAASIRDIKRERVARERENSGEDNTTEEVGQQDLTKRRVLRSRYLAVIHEISERREDLSKDLDKFNVIINEVEKLHEQVQKPREQVADAEALQDIANSLVTSIRSQSNEGVTPSDFVSCLLREFADINTSIKSEEHDLVSVSWKDIGRSVSSIFMNGHGCRTMLGPMSNQLKQRKTNNISRKRSRPTESSRPAEVEDNGSEAKTDTDKNMGIMFGILRRNKTVKLEHLILNRKSFAQTVENLFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHSAIMSHEVNYSHFVFRFDYKDWKPMVDMVPVGEELMPHRNSLNSVQVSQEEATADDAEAAALPTTPIRKLSRNRGLVMQTVVEDSPDNDTHSGATAILRCKRKLSQG 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5451463 5454421 - Lsi06G004720.1 Lsi06g00472 665202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00472 407 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 33 404 - -
Lsi06g00472 407 MobiDBLite consensus disorder prediction 29 59 - -
Lsi06g00472 407 PANTHER UNCHARACTERIZED 33 404 IPR027786 GO:0005634|GO:0006281|GO:0030915
Lsi06g00472 407 MobiDBLite consensus disorder prediction 207 230 - -
Lsi06g00472 407 MobiDBLite consensus disorder prediction 190 232 - -
Lsi06g00472 407 MobiDBLite consensus disorder prediction 1 59 - -
Lsi06g00472 407 Pfam Nse4 C-terminal 249 336 IPR014854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00472 K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4 - csv:101220149 701.819
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g128 . . . . . Bpe08g01238 . . Cmo10g01012 Cmo11g00835 Cma10g00964 . . . Sed08g1045 . Cpe18g00141 Bhi02g01603 Tan09g0895 Cmetu02g0721 . . . . . . . . . . . . . Cone18ag0124 Cone11ag1467 Lsi06g00472 . . . . . . . . . . . . . . Cma11g00828 . . . . Cpe04g00939 . . . . . . . Cla03g01320 Cam03g1398 Cec03g1430 Cco03g1418 Clacu03g1417 Cmu03g1978 Cre03g1651 . Csa01g03120 Chy02g01406 Cme02g00472
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00472 . 57 405 Non-SMC Element family AT1G51130 56.1 1.2e-98 357.1
Lsi06g00472 . 57 385 Non-SMC Element family AT3G20760 52.9 1.3e-89 327.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00472 Lsi_Chr06 FPKM 44.880241 46.849033 37.303867 36.874519 46.203598 57.953682 50.977345 49.337402 50.559608 46.864742