Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00498 ATGTCTGCCACGAACACGAATGTCGCCAGCGGTGTCGATGACCACGTCTTGGCTACCGCTCAACAGATCGTCAAGAGTTTCAATACCCCTAAAGAGGTTCGTGAGGATATGCTCTTGATTCTCTCCAGTTTTGATAATCGTCTTTCTTGTATCAGTAGTATGATCAACAGTGAAGATTCCAAGACTAAGAATGATAGGTTGGATGCCGCCGAGAAGGTGATTCTACGTTGGGACCCTAATTCTGATGTGTCGAGACAGTCGTTTAATTGGGAGGATTCGCCGGACGAGGCATCTGAATATTTATCGGCGGTGGATGATATTCTCCAGTTAGTGGAAGAGCTTTCAATTGGGTCTGAATCAACCGACATTATAGACCGGGCGGAAAACGCGATCCAAATGGCAATGTGTCGGCTCGAGAGCGAATTTCGCCATATCTTGATCCAGAGCACAGTCCCTCTCGACGCCGAACGGCTTTACGGCTCGATCCGGAGAGTTCACCTCTCGTTTGCATCCCATTATAGTGAAATTGACGACGAATTCGAGAGTTTCAGCGAGGAAAGTCGCAGTTCTGGGCGATTTCATGAGCGAGGTGCTACAATTGGAGAAGATTCTTGGGTCGATTTGATCCATCCCGATGCAGCTGTTGATCTTTCAGAGATTGCGGACCGTATGATTCGCTCTGGCTATGAAAAGGAGTGTGTTCAAGTCTACAGCACCGTTCGTCGTGATGCTTTGGATGAGTGCTTGGCAATTCTTGGTGTCGAACGACTTAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTCTTGGATGAGAAGATGAAGAAATGGATTCAAGCTGTCAAAATTACAGTTCGATTGATTTTGGAAGGTGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGCCAATGAATCCAAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTGTTGAATTTTGGTGAGGCAGTGGCTATTGGGAATAGGTCACCAGAGAAGTTGTTCCGAATCTTGGATATGTACGATGCTTTGGTCGGTGTTTTGCCCGACTTGGAAGCCATGGTCTCTGATGAGTTTCTAATCAGTGAAGCACATGGAGTATTATCTGGACTGGGAGAAGCAGCCACAGGGACATTTGTCGAGTTTGAGATTGCCATTGAAAGCGAAAATTCAAAGAAAGCAATGCAAAACGCCGAGATTCACCCACTTATTCGATATGTAATGAATTATCTTAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGATGAGGAAATACAAGACTTACTAAACGAGAGGGATAACAGCGATAATCTGCAGTTGGAAAGTACGTCGCTTTTAGCTCGTAGATTATTAATGTTGTTATCGTCTTTGGAGTCTAATCTTATGGAAAAATCCAAGCTATATGAGGATGTTGCTATGCAGTTCATATTTCTAATGAACAATATACTGTACATAGTGAAAAAAGTAAAAGATTCTGAGCTTGCCCAGCTGCTTGGCGATAATTGGCTTCGCAGGCATAGTGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCTTCTTGGAGTAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAGGAAATCTGTAGGGTTCAAACAACTTGGAAGGTATCAGATGCTCAACTACGCGATGAATTGATAATATCCATTTCGGAGAAGGTGATTCCAGCATATCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGCGGAAGAAATTTTGGGAAGTACATAAAGTACACGCCGGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCACCTCTTGTATCACATCACTTGCGAAGAAAGGGTACTTGA 1956 43.25 MSATNTNVASGVDDHVLATAQQIVKSFNTPKEVREDMLLILSSFDNRLSCISSMINSEDSKTKNDRLDAAEKVILRWDPNSDVSRQSFNWEDSPDEASEYLSAVDDILQLVEELSIGSESTDIIDRAENAIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLSFASHYSEIDDEFESFSEESRSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILEGEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGNRSPEKLFRILDMYDALVGVLPDLEAMVSDEFLISEAHGVLSGLGEAATGTFVEFEIAIESENSKKAMQNAEIHPLIRYVMNYLRLLVDYSKTMNSLLEDEEIQDLLNERDNSDNLQLESTSLLARRLLMLLSSLESNLMEKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTTWKVSDAQLRDELIISISEKVIPAYRSFLGRFRNQLESGRNFGKYIKYTPEDLENSLSDLFEGSPLVSHHLRRKGT 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5933403 5935358 + Lsi06G004980.1 Lsi06g00498 665228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00498 651 Pfam Exo70 exocyst complex subunit 275 634 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi06g00498 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 49 650 IPR004140 GO:0000145|GO:0006887
Lsi06g00498 651 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 49 650 - -
Lsi06g00498 651 Gene3D Exocyst complex component Exo70 73 644 - -
Lsi06g00498 651 SUPERFAMILY Cullin repeat-like 65 637 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00502 Lsi-Chr2:4257529 Lsi06g00498 Lsi-Chr6:5933403 0 dispersed
Lsi06g00498 Lsi-Chr6:5933403 Lsi07g00994 Lsi-Chr7:13795587 1.94E-143 dispersed
Lsi10g01339 Lsi-Chr10:17641018 Lsi06g00498 Lsi-Chr6:5933403 3.59E-98 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00498 K07195 - csv:101205970 1107.05