Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00508 ATGGAGAATCTTATGATGGTTGATGATGCTTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCTGAGAAAGATGTTAGTGATGAAGAAATCGATGCAGAGGATCTGGAGAGGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGAGAGAAGATTGCTGCACAACAGGCTGCGGAGAAGCAGAAACCAAAGCAGACATCCGACCAAGCTCGAAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGTTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTTGTATATGGCATTATACCTGAAAAGGGGAAACCAGTTAGTGGTGCTTCTGATAACATTCGAGCTTGGTGGAAAGAAAAAGTTAAATTTGACAAGAATGGACCGGCTGCTATAGCCAAGCATGAAGCGGAATGTCTTGCCAAAGGAGAGGCAGATGGAAGTGGAAACGGTAATTCCCAGAGCGTTCTTCAAGACCTTCAAGATGCAACACTTGGGTCTCTTTTGTCTTCTTTGATGCAACATTGCAATCCCCCTCAGCGGAAGTACCCTTTAGAAAAGGGGGGTCCTCCACCCTGGTGGCCCTCTGGGAATGAAGATTGGTGGGTAAAACTTGGGCTATCCCATGGCAATGGTCCTCCATATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTGGGGGTCTTAACAGCTGTAATAAAACATATGTCACCTGATATTGCAAAGATAAGGAGGCACGTACGGCAGTCGAAGTGCTTACAAGACAAGATGACAGCAAAGGAGAGTGCAATTTGGCTAGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGTGATAATGGAGCTTCTGGAATAACGGAGACACCAGTAGGTGGTCGTGGTGAAAAGCAAGCTGCAGTAAGCAGTGAAAGTGATTATGATGTTGACCTTGCCGATGATGGTGTCAGGTCAGTTTCTTCTAAAGAGTACAGGAGACCTCGATCCGTGGATGTGGAGCCATCCAGTAATCTTCGCAATAATGCTCCTCAACCTGCTGAAGGAAAGGAGCAAGGTGAAAAACAAAGGAGAAAAAGGCATCGTGGTGGCAGGACAAAGCCTGTCGATCAAACACTGGCTTCATCTGGGAACGAAGAAGAACCATGTGTCGAACCAAGAACTACTCAGCTTGATATTAACCATTCTAATGTACCATTAGATAGATTTGAAATTCCAGGAAACCGACAACAACAGGATACTGTCACAGCTTTGAGGCCACTCGAGGACTTGGATGTCCAATCAGAACTACCAGCTCCCCAGTTGTTCAACATGTTCTCTGCGCCATCCTCTGATAATATCAATATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCTGTAATGCAGAATGCTGAGGTGCAACGTGAAAGTGCTTACAATATTTATAATCAATCGGTCGAATATAGACCCAATTTTGATGTGCAGCATTCTCAATTTGTTAATGAGCCTCAAATGAGATTGGAGGAAGGAGTACATATTCCGACACAACATAGAAACAATGAGACAGTAGGAGAAGAATTCAACTATGTAAAAGAAACGTTCAACACCGAACAAGATAGGCCTATTGATCCACAGTTTGGATCACCAATCAACAGTCTGTCATTAGATTATGGAGCAGTTAACAGTCCATTCCATCTTGGAATCGACGTTTCAACCTCATTCGATGACCTTTTGGTTGATGACGATTTGATACAATACTTCGGAGCCTAA 1812 43.38 MENLMMVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIDAEDLERRMWKDRIKLKRIKEREKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKHEAECLAKGEADGSGNGNSQSVLQDLQDATLGSLLSSLMQHCNPPQRKYPLEKGGPPPWWPSGNEDWWVKLGLSHGNGPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGGRGEKQAAVSSESDYDVDLADDGVRSVSSKEYRRPRSVDVEPSSNLRNNAPQPAEGKEQGEKQRRKRHRGGRTKPVDQTLASSGNEEEPCVEPRTTQLDINHSNVPLDRFEIPGNRQQQDTVTALRPLEDLDVQSELPAPQLFNMFSAPSSDNINIISTQSMYVDGRPLLYPVMQNAEVQRESAYNIYNQSVEYRPNFDVQHSQFVNEPQMRLEEGVHIPTQHRNNETVGEEFNYVKETFNTEQDRPIDPQFGSPINSLSLDYGAVNSPFHLGIDVSTSFDDLLVDDDLIQYFGA 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6119902 6121713 + Lsi06G005080.1 Lsi06g00508 665238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00508 603 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 602 IPR006957 GO:0005634
Lsi06g00508 603 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 1 602 - -
Lsi06g00508 603 Coils Coil 39 59 - -
Lsi06g00508 603 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700|GO:0005634
Lsi06g00508 603 MobiDBLite consensus disorder prediction 289 401 - -
Lsi06g00508 603 MobiDBLite consensus disorder prediction 62 85 - -
Lsi06g00508 603 MobiDBLite consensus disorder prediction 326 348 - -
Lsi06g00508 603 Pfam Ethylene insensitive 3 40 287 IPR006957 GO:0005634
Lsi06g00508 603 Gene3D - 74 155 IPR023278 GO:0003700|GO:0005634
Lsi06g00508 603 Gene3D - 160 298 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00508 Lsi-Chr6:6119902 Lsi08g00615 Lsi-Chr8:14472422 1.68E-131 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25477 PF04873 EIN3 3.60E-125 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00508 K14514 - csv:101210347 1076.62