Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00508 ATGGAGAATCTTATGATGGTTGATGATGCTTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCTGAGAAAGATGTTAGTGATGAAGAAATCGATGCAGAGGATCTGGAGAGGCGTATGTGGAAGGATAGGATCAAGCTTAAAAGGATTAAGGAAAGAGAGAAGATTGCTGCACAACAGGCTGCGGAGAAGCAGAAACCAAAGCAGACATCCGACCAAGCTCGAAGGAAGAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGTTGAAACTGATGGAAGTATGCAAAGCTCGGGGATTTGTATATGGCATTATACCTGAAAAGGGGAAACCAGTTAGTGGTGCTTCTGATAACATTCGAGCTTGGTGGAAAGAAAAAGTTAAATTTGACAAGAATGGACCGGCTGCTATAGCCAAGCATGAAGCGGAATGTCTTGCCAAAGGAGAGGCAGATGGAAGTGGAAACGGTAATTCCCAGAGCGTTCTTCAAGACCTTCAAGATGCAACACTTGGGTCTCTTTTGTCTTCTTTGATGCAACATTGCAATCCCCCTCAGCGGAAGTACCCTTTAGAAAAGGGGGGTCCTCCACCCTGGTGGCCCTCTGGGAATGAAGATTGGTGGGTAAAACTTGGGCTATCCCATGGCAATGGTCCTCCATATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTGGGGGTCTTAACAGCTGTAATAAAACATATGTCACCTGATATTGCAAAGATAAGGAGGCACGTACGGCAGTCGAAGTGCTTACAAGACAAGATGACAGCAAAGGAGAGTGCAATTTGGCTAGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGTGATAATGGAGCTTCTGGAATAACGGAGACACCAGTAGGTGGTCGTGGTGAAAAGCAAGCTGCAGTAAGCAGTGAAAGTGATTATGATGTTGACCTTGCCGATGATGGTGTCAGGTCAGTTTCTTCTAAAGAGTACAGGAGACCTCGATCCGTGGATGTGGAGCCATCCAGTAATCTTCGCAATAATGCTCCTCAACCTGCTGAAGGAAAGGAGCAAGGTGAAAAACAAAGGAGAAAAAGGCATCGTGGTGGCAGGACAAAGCCTGTCGATCAAACACTGGCTTCATCTGGGAACGAAGAAGAACCATGTGTCGAACCAAGAACTACTCAGCTTGATATTAACCATTCTAATGTACCATTAGATAGATTTGAAATTCCAGGAAACCGACAACAACAGGATACTGTCACAGCTTTGAGGCCACTCGAGGACTTGGATGTCCAATCAGAACTACCAGCTCCCCAGTTGTTCAACATGTTCTCTGCGCCATCCTCTGATAATATCAATATAATTTCCACTCAGAGCATGTATGTTGATGGAAGGCCTTTGTTGTATCCTGTAATGCAGAATGCTGAGGTGCAACGTGAAAGTGCTTACAATATTTATAATCAATCGGTCGAATATAGACCCAATTTTGATGTGCAGCATTCTCAATTTGTTAATGAGCCTCAAATGAGATTGGAGGAAGGAGTACATATTCCGACACAACATAGAAACAATGAGACAGTAGGAGAAGAATTCAACTATGTAAAAGAAACGTTCAACACCGAACAAGATAGGCCTATTGATCCACAGTTTGGATCACCAATCAACAGTCTGTCATTAGATTATGGAGCAGTTAACAGTCCATTCCATCTTGGAATCGACGTTTCAACCTCATTCGATGACCTTTTGGTTGATGACGATTTGATACAATACTTCGGAGCCTAA 1812 43.38 MENLMMVDDALGDCSDMEVDDIRCDNIAEKDVSDEEIDAEDLERRMWKDRIKLKRIKEREKIAAQQAAEKQKPKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKHEAECLAKGEADGSGNGNSQSVLQDLQDATLGSLLSSLMQHCNPPQRKYPLEKGGPPPWWPSGNEDWWVKLGLSHGNGPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREESLIRQPSSDNGASGITETPVGGRGEKQAAVSSESDYDVDLADDGVRSVSSKEYRRPRSVDVEPSSNLRNNAPQPAEGKEQGEKQRRKRHRGGRTKPVDQTLASSGNEEEPCVEPRTTQLDINHSNVPLDRFEIPGNRQQQDTVTALRPLEDLDVQSELPAPQLFNMFSAPSSDNINIISTQSMYVDGRPLLYPVMQNAEVQRESAYNIYNQSVEYRPNFDVQHSQFVNEPQMRLEEGVHIPTQHRNNETVGEEFNYVKETFNTEQDRPIDPQFGSPINSLSLDYGAVNSPFHLGIDVSTSFDDLLVDDDLIQYFGA 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6119902 6121713 + Lsi06G005080.1 Lsi06g00508 665238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00508 603 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 1 602 IPR006957 GO:0005634
Lsi06g00508 603 PANTHER ETHYLENE INSENSITIVE 3-LIKE 3 PROTEIN 1 602 - -
Lsi06g00508 603 Coils Coil 39 59 - -
Lsi06g00508 603 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700|GO:0005634
Lsi06g00508 603 MobiDBLite consensus disorder prediction 289 401 - -
Lsi06g00508 603 MobiDBLite consensus disorder prediction 62 85 - -
Lsi06g00508 603 MobiDBLite consensus disorder prediction 326 348 - -
Lsi06g00508 603 Pfam Ethylene insensitive 3 40 287 IPR006957 GO:0005634
Lsi06g00508 603 Gene3D - 74 155 IPR023278 GO:0003700|GO:0005634
Lsi06g00508 603 Gene3D - 160 298 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00508 K14514 EIN3; ethylene-insensitive protein 3 - csv:101210347 1076.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00508 Lsi-Chr6:6119902 Lsi08g00615 Lsi-Chr8:14472422 1.68E-131 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g153 Blo03g00996 . . . . . Bma14g00784 . . Cmo11g00844 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00508 . . . . . Bda07g00734 . . Bpe11g00907 . . . . . Cma11g00834 . . . . Cpe04g00932 . . . . . . . Cla03g01291 Cam03g1360 Cec03g1399 Cco03g1385 Clacu03g1384 Cmu03g1950 Cre03g1623 . Csa01g03142 Chy02g01432 Cme02g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00444 . 2 628 EIL Transcription Factor Family AT2G27050 59.0 2.1e-192 669.1
Lsi08g00615 . 8 572 EIL Transcription Factor Family AT2G27050 58.7 1.7e-170 596.3
Lsi06g00508 . 44 350 EIL Transcription Factor Family AT2G27050 58.3 1.8e-95 347.1
Lsi06g00508 . 44 578 EIL Transcription Factor Family AT1G73730 54.2 3.2e-142 502.3
Lsi06g00444 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.0e-105 378.3
Lsi08g00615 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.0e-103 374.4
Lsi07g00166 . 27 273 EIL Transcription Factor Family AT1G73730 54.3 1.6e-72 270.8
Lsi06g00444 . 3 628 EIL Transcription Factor Family AT3G20770 60.1 5.3e-210 727.6
Lsi08g00615 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.4e-172 602.1
Lsi06g00508 . 44 292 EIL Transcription Factor Family AT3G20770 68.9 2.1e-97 353.6
Lsi06g00508 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 8.1e-69 258.5
Lsi07g00166 . 27 355 EIL Transcription Factor Family AT5G10120 55.6 1.1e-98 357.5
Lsi06g00508 . 44 290 EIL Transcription Factor Family AT5G10120 53.6 3.0e-72 269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008299 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25477 PF04873 EIN3 3.60E-125 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00508 Lsi_Chr06 FPKM 20.423077 24.461573 0.0 0.671078 0.0 0.0 0.0 0.0 0.0 0.0