Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00527 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCACTTTGCCAGCTATGCACGGTGAATGTCTGACACAGTCTACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGTATTTTATTTTTGTCATGGACAGGGCTACCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCGAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTTCCATACCTTCATGAGTCTAGACATCAGCATGCCATTAGAAGGTCGAGGAGTAGTGGAGGGCGTTTTGCAAAGAAAAACGAAGCTGATGGGAAGGAGATGCATTCTGATAAATTAAACGAGAGTGGTTACCGCCTAGATGACGGTTCTGAACAGCAGAATGGAAGCTCCTTGACAAACAAGGCCTCCGAGTAG 843 45.2 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLVFYFCHGQGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKLNESGYRLDDGSEQQNGSSLTNKASE 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6472242 6477194 + Lsi06G005270.1 Lsi06g00527 665257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00527 280 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Lsi06g00527 280 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 32 271 - -
Lsi06g00527 280 ProSiteProfiles NF-YA/HAP2 family profile. 179 242 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 82 102 - -
Lsi06g00527 280 SMART cbf3 178 242 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 39 67 - -
Lsi06g00527 280 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 262 280 - -
Lsi06g00527 280 MobiDBLite consensus disorder prediction 221 280 - -
Lsi06g00527 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 239 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 237 261 - -
Lsi06g00527 280 MobiDBLite consensus disorder prediction 1 22 - -
Lsi06g00527 280 MobiDBLite consensus disorder prediction 1 17 - -
Lsi06g00527 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 271 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 37 102 - -
Lsi06g00527 280 Gene3D - 179 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00084 Lsi-Chr1:819804 Lsi06g00527 Lsi-Chr6:6472242 6.46E-31 dispersed
Lsi10g01067 Lsi-Chr10:14907187 Lsi06g00527 Lsi-Chr6:6472242 3.65E-96 wgd
Lsi02g02572 Lsi-Chr2:32168608 Lsi06g00527 Lsi-Chr6:6472242 3.19E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25478 PF02045 CBFB_NFYA 5.60E-23 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00527 K08064 - csv:101212860 489.574