Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00527 ATGCAGTCAAAGTCTGAAACCAATAATCAGCTTGATCCAAATGGTGCTCCATCCACGAGTATCTATTATGAACCCTGGTGGCGTGGTATGGGGTACAATACTTTTCCGTTACCTGTGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAATGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCACATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTTTCATCCACTTTGCCAGCTATGCACGGTGAATGTCTGACACAGTCTACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGAGGAATGATGGCTTTCTATGGTCATCAGCCCTTGGTATTTTATTTTTGTCATGGACAGGGCTACCCTATGGTCGGAGGACCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCGAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCTGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTTCCATACCTTCATGAGTCTAGACATCAGCATGCCATTAGAAGGTCGAGGAGTAGTGGAGGGCGTTTTGCAAAGAAAAACGAAGCTGATGGGAAGGAGATGCATTCTGATAAATTAAACGAGAGTGGTTACCGCCTAGATGACGGTTCTGAACAGCAGAATGGAAGCTCCTTGACAAACAAGGCCTCCGAGTAG 843 45.2 MQSKSETNNQLDPNGAPSTSIYYEPWWRGMGYNTFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSTLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPLVFYFCHGQGYPMVGGPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRSRSSGGRFAKKNEADGKEMHSDKLNESGYRLDDGSEQQNGSSLTNKASE 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6472242 6477194 + Lsi06G005270.1 Lsi06g00527 665257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00527 280 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Lsi06g00527 280 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 32 271 - -
Lsi06g00527 280 ProSiteProfiles NF-YA/HAP2 family profile. 179 242 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 82 102 - -
Lsi06g00527 280 SMART cbf3 178 242 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 39 67 - -
Lsi06g00527 280 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 262 280 - -
Lsi06g00527 280 MobiDBLite consensus disorder prediction 221 280 - -
Lsi06g00527 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 182 239 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 237 261 - -
Lsi06g00527 280 MobiDBLite consensus disorder prediction 1 22 - -
Lsi06g00527 280 MobiDBLite consensus disorder prediction 1 17 - -
Lsi06g00527 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 271 IPR001289 GO:0003700|GO:0006355
Lsi06g00527 280 MobiDBLite consensus disorder prediction 37 102 - -
Lsi06g00527 280 Gene3D - 179 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00527 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212860 489.574
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00084 Lsi-Chr1:819804 Lsi06g00527 Lsi-Chr6:6472242 6.46E-31 dispersed
Lsi10g01067 Lsi-Chr10:14907187 Lsi06g00527 Lsi-Chr6:6472242 3.65E-96 wgd
Lsi02g02572 Lsi-Chr2:32168608 Lsi06g00527 Lsi-Chr6:6472242 3.19E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g216 Blo03g00980 Blo03g01379 . . Bpe01g00318 Bpe08g01208 Bma14g00770 Bma07g01396 Cmo10g00972 Cmo11g00859 Cma10g00928 . . . Sed08g1078 Cpe05g00493 Cpe18g00169 Bhi02g01538 Tan09g0832 Cmetu02g0337 . Hepe09g1122 . . Cla02g02245 Cam02g2393 Cec02g2427 Cco02g2469 Clacu02g2363 Cmu02g2297 Cre02g2617 . Cone5ag1448 Cone18ag0101 Cone11ag1494 Lsi06g00527 Csa06g02549 Chy05g00137 Cme05g00165 Blo08g00103 Blo14g00284 . Bda09g00320 Bpe08g00276 Bpe11g00922 Bma07g00265 Bma11g00292 . Cmo02g01293 Cmo20g00092 Cma11g00848 Cma20g00089 Car02g01043 Car20g00071 Cpe16g00877 Cpe04g00917 Bhi10g00303 . . . . . . Cla03g01271 Cam03g1337 Cec03g1373 Cco03g1365 Clacu03g1359 Cmu03g1930 Cre03g1600 . . Chy02g01451 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g01067 . 163 399 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.4 1.4e-46 183.7
Lsi06g00527 . 58 242 CCAAT-HAP2 Transcription Factor Family AT3G20910 57.5 1.0e-41 167.5
Lsi01g00084 . 31 164 CCAAT-HAP2 Transcription Factor Family AT1G30500 65.0 3.2e-41 165.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25478 PF02045 CBFB_NFYA 5.60E-23 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00527 Lsi_Chr06 FPKM 5.628362 4.90653 54.121174 50.89138 0.510786 0.913403 1.156855 195.175156 201.828812 182.129517