Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00550 ATGTTTCAAGATGAAGGCACATCCTCCATAACTTCCTCCCCTCTCCAATTCTTCACAATGATGTCTCTTTCCCCTAAATTGGGTTCTCCATATCCATGGCTTAGAGAGCTCAAATCTGAGGAGAGGGGCTTGTATTTAATCCATTTGTTGCTTACTTGTGCAAACCATGTGGCTGTTGGTAGCCTTGACAATGCTAATCTTGCCCTTGATCAAATATCCCATCTTGCTTCTGCAGATGGTGATACAATGCAACGAATTGCGGCGTATTTTGCCGAAGCTCTCGCTGATAGGATCCTCAAGACTTGGCCTGGTCTTTATAAGGCCTTCAACTCTACTAAGATACCAATGGTTTCAGAGAAGATTCTTGTTAAGAAACTCTTCTTTGAAATGTTTCCATTCCTTAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAAGGGGAAAAGATGATTCATATAATTGATCTCAATGCTAATGAAACTGCTCAATGGCTTGCTCTTTTGCAAGTACTGAGTGTGAGGCCTGAAGGACCTCCACATTTGAGAATCACTGGAGTTCATCCACAGAAAGAGGTTCTGGATCAAATGGCTCGTAGGCTGACCGATGAAGCCGAGAAATTGGATATTCCATTTCAATTCAATTCCGTTATCAGCCAACTAGAGGATCTTGATATGGAAAAGCTTCGTGTGAAAACTGGGGAGGCTTTGGCTATCAATTCAGTTCTTCAGTTGCACACCCTTTTGGGCTGTGATAATGAAATCTTGCAAAAGCCATCTCCATCAGCAGCCAAAAGTGTAAATGGAGTTCAATACTCGAGATACCCGCATCTTAAACAAACCACCTTGAGCGAGTTACTCGACAATTGCAGTCCAAGTCCTGATTCAGTTTCGTCGTCAGCATTATCTCAGGCTAATGCGACAAAGATCGACAGCTTTTTGAATGGATTATGGAGTTTGACACCGAAGGTGATAGTCGTAACGGAACAAGATTCTAACCATAATGGCTCAACACTTATGGAGAGATTACTGGAGGCTCTCCATACATATGCAGCTATCTTTGATTGTTTGGAGTCTAACATGTCAAGAACATCCCTAGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGAGAAGAGATTAAGAACATCATAGCTTGTGAGGGAGCTGAGAGGAAGGAACGACATGAAATACGAGAGAAATGGAGTCAACGGTTCGATGTCGCGGGGTTCAGGCATGTGTCTTTGAGTTATTATGGAATGCTGCAGGCTCGGAGCTTGCTGCAGGGGTATGGTTGTGGTGGTTATAGGATGAAGGAAGAGAATGGCTGTGTGATGATTTGTTGGCAAGATCGTCCATTGTTCTCAGTTTCAGCTTGGAGATGTTGTAAGTAG 1401 42.97 MFQDEGTSSITSSPLQFFTMMSLSPKLGSPYPWLRELKSEERGLYLIHLLLTCANHVAVGSLDNANLALDQISHLASADGDTMQRIAAYFAEALADRILKTWPGLYKAFNSTKIPMVSEKILVKKLFFEMFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNANETAQWLALLQVLSVRPEGPPHLRITGVHPQKEVLDQMARRLTDEAEKLDIPFQFNSVISQLEDLDMEKLRVKTGEALAINSVLQLHTLLGCDNEILQKPSPSAAKSVNGVQYSRYPHLKQTTLSELLDNCSPSPDSVSSSALSQANATKIDSFLNGLWSLTPKVIVVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSLERLKLEKMLFGEEIKNIIACEGAERKERHEIREKWSQRFDVAGFRHVSLSYYGMLQARSLLQGYGCGGYRMKEENGCVMICWQDRPLFSVSAWRCCK 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6937613 6939013 - Lsi06G005500.1 Lsi06g00550 665280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00550 466 Pfam GRAS domain family 46 463 IPR005202 -
Lsi06g00550 466 ProSiteProfiles GRAS family profile. 37 463 IPR005202 -
Lsi06g00550 466 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 465 IPR005202 -
Lsi06g00550 466 PANTHER SCARECROW-LIKE PROTEIN 3 2 465 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00050 Lsi-Chr4:646101 Lsi06g00550 Lsi-Chr6:6937613 0 dispersed
Lsi06g00550 Lsi-Chr6:6937613 Lsi03g00413 Lsi-Chr3:4715972 2.52E-82 dispersed
Lsi06g00550 Lsi-Chr6:6937613 Lsi10g00057 Lsi-Chr10:977937 3.98E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25481 PF03514 GRAS 2.30E-140 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00550 - - csv:101215435 863.603