Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00559 ATGTCAACGCCTCATTTGGAGCTACAAATTGCAACGATAGATAATCCTTCAAATGCAGTGGAATGGACAATGGCGGAGTTACTCAATGAACAAAAAATTCTCAAGAAAGCTATTAAAGAATTGGATGAAGTAGTTGGAAGAGAAAGGTTGGTTCAAGAATCTGATATCTCAAAACTCAAGTATCTCACAGCTTGTGCAAGGGAATCTTTTCGTCTTCATCCATTTTCATCCTTCAATGTTCCTCATGTTTCCAACTCTGACATTGTCGTGGCTGGCTACTTCATCCCAAAAGGTAGTCAAGTTTTGCTATCTCGTATAGGTCTTGGGCGAAACCCAAGGATTTGGGAAGATCCATTGAGATTTGATCCAGAACGTCATCTAAAAGATGGAACAGTTGAATTAGGAATTTCGGAACCCAATCTTAGATTCATCACCTTCACTAGAGGGAGGAGAGGTTGTGTTGGTACCTTACTTGGCACTAACATTACAATGATGTTACTTGCTAGACTTGTACAAGGATTTTCATGGAGCTTATTGCCAGGAATCACAAAAATAGATTTCTATGGAACTCGTGAACTCCCTCTACCAAAGCCATTGCATTTGCATGCAGAACCACGTCTATCTCATAGTATGTACCAAACACTTATTGGTCATCAACCATAA 663 39.67 MSTPHLELQIATIDNPSNAVEWTMAELLNEQKILKKAIKELDEVVGRERLVQESDISKLKYLTACARESFRLHPFSSFNVPHVSNSDIVVAGYFIPKGSQVLLSRIGLGRNPRIWEDPLRFDPERHLKDGTVELGISEPNLRFITFTRGRRGCVGTLLGTNITMMLLARLVQGFSWSLLPGITKIDFYGTRELPLPKPLHLHAEPRLSHSMYQTLIGHQP 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7135816 7136702 + Lsi06G005590.1 Lsi06g00559 665289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00559 220 SUPERFAMILY Cytochrome P450 7 206 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 PRINTS E-class P450 group I signature 143 153 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 PRINTS E-class P450 group I signature 153 176 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 PRINTS E-class P450 group I signature 20 46 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 PRINTS E-class P450 group I signature 104 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 PRINTS E-class P450 group I signature 63 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 PANTHER PHENYLALANINE N-MONOOXYGENASE 6 212 - -
Lsi06g00559 220 Gene3D Cytochrome P450 5 214 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 212 - -
Lsi06g00559 220 Pfam Cytochrome P450 5 198 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00559 220 Coils Coil 24 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00559 Lsi-Chr6:7135816 Lsi06g00563 Lsi-Chr6:7194034 2.22E-128 dispersed
Lsi06g00559 Lsi-Chr6:7135816 Lsi06g00560 Lsi-Chr6:7152151 6.27E-108 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00559 - K12153 csv:101215911 358.607