Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00560 ATGCATTTTCAATTGGCTTATGCATATCAAAACTGTACAAAAGCAACCATAGCCAAAACCTTCATTTCTATCGTTTTATTCATATCTTCCATTATTATTTATGTTATTAAGTTCTCTCAATGTTACCGCAAAAGAAAGCCCTCAATCCCCCCGCTGCCACCTGGCCCGAAGCCATGGCCTCTCCTCGGCTGCCTTCCAACAATGTTGTGGAACAAAAACTCGCAAACACACCAATGGATTCATGCAATAATGAAGCAATTCAACACTGAAATTGCCTGCATCCGTCTCGGATCAAATACCCACATAATCCCTGTGGCTTCTCCAGAACTCGCCCTTGAATTTTTAAAGACACACGATTCTGTTTTCGGATCACGACCAATTTCCACGACTGCGGAGATATTGAGCCATGGATATCTCGGTGCAGTTCTTTCACCCATGGGGGATCAATGGAAGAAGATGAGAAGGATACTTATTTCTCAAGTACTCAATCCTTCAACTCTCCATGGAATGCTTGGCCAAAGAACAAAGGAAGCTGATACTCTTCTACGTTACATTTTCAGCCTTAGCAGAAATGGTGAAGCGGTTAACATAAGAAGCATTACACGACATTATTGTGGTAGCATTATTAGAAGAATGGTGTTCAGTAGAAGATACTATGGAAAAGGGAGAGAAGATGGGGGGCCATCTTTTGAAGAAGAGAACCATAATCAAGCATTGTTTACGATTCTAACACATCTTAATGCATTTTCCATATCAGAATTTATACCTTGTTTGAAGCCATTTGATCTGGATGGACACAAGAAGATAGTAAAAAGGGCTTTTAAAGTCATAAGAGATCTTGACGAACCCATTATAGAGGAAAGAGTGCAAGAATGGAGAGATGGGAAGAAAAGAGAGGAGCTGCAACTCGCAACCATAGACAATCCTTCAAACGCAGTGGAATGGGCAATGGTAGAGTTACTCAATCAACCGAAAATTCTCCAAAAAGTTGTTGAAGAATTGGATGACATACCTAATCTCAAGTATCTCACAGCTTGTATTAGAGAATCTTTTCGACTTCATCCATTTTCACCCTTCAATGTTCCACACGTTTCCAATTCTGATGTTGTGGTGGCTGGCTACTTCATCCCTAAAGGTAGCCAAGTCTTGCTATGTCGGTTGGGTCTCGGTCGAAACCCAAGGATTTGGAGAGATCCATTAAGATTTGATCCAGAACGCCATTTACAAGATGGAACAATTGAATTAGGAATTTCAGAACCCAATCTTCGATTCATCACTTTCACTAGAGGGAGGAGAGGTTGTATTGGTTCCTCACTTGGCACTAACATTACTTTGATGTTATTTGCTAGACTTGTACAAGGATTTTCATGGAGCTTATTGTCAGGAAACATAAAGATAGACTTTTCTGAAACGCATGAACTCTCTCTATCGAAACCCTTGCATTTACATGCAGAG 1455 40.55 MHFQLAYAYQNCTKATIAKTFISIVLFISSIIIYVIKFSQCYRKRKPSIPPLPPGPKPWPLLGCLPTMLWNKNSQTHQWIHAIMKQFNTEIACIRLGSNTHIIPVASPELALEFLKTHDSVFGSRPISTTAEILSHGYLGAVLSPMGDQWKKMRRILISQVLNPSTLHGMLGQRTKEADTLLRYIFSLSRNGEAVNIRSITRHYCGSIIRRMVFSRRYYGKGREDGGPSFEEENHNQALFTILTHLNAFSISEFIPCLKPFDLDGHKKIVKRAFKVIRDLDEPIIEERVQEWRDGKKREELQLATIDNPSNAVEWAMVELLNQPKILQKVVEELDDIPNLKYLTACIRESFRLHPFSPFNVPHVSNSDVVVAGYFIPKGSQVLLCRLGLGRNPRIWRDPLRFDPERHLQDGTIELGISEPNLRFITFTRGRRGCIGSSLGTNITLMLFARLVQGFSWSLLSGNIKIDFSETHELSLSKPLHLHAE 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7152151 7163860 + Lsi06G005600.1 Lsi06g00560 665290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00560 485 Gene3D Cytochrome P450 303 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 Pfam Cytochrome P450 302 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 Pfam Cytochrome P450 53 298 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 SUPERFAMILY Cytochrome P450 53 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 Gene3D Cytochrome P450 46 302 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 30 300 - -
Lsi06g00560 485 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 299 485 - -
Lsi06g00560 485 PRINTS E-class P450 group I signature 344 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 PRINTS E-class P450 group I signature 110 131 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00560 485 PANTHER PHENYLALANINE N-MONOOXYGENASE 30 300 - -
Lsi06g00560 485 PANTHER PHENYLALANINE N-MONOOXYGENASE 299 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00560 Lsi-Chr6:7152151 Lsi06g00567 Lsi-Chr6:7375060 0 dispersed
Lsi06g00559 Lsi-Chr6:7135816 Lsi06g00560 Lsi-Chr6:7152151 6.27E-108 tandem
Lsi06g00560 Lsi-Chr6:7152151 Lsi06g00561 Lsi-Chr6:7172847 1.60E-69 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00560 - K12153 csv:101216819 725.317