Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00563 ATGGAAGCTGCTTTCTTATTCATTAGTCAATTGGCACACCAAAACTCTCCAATAGCTATAAGGTCCAAAACTTTCATTGTGTTTGCATTTATGGCTTTCACTTCTATCATGTTTTTCCAATTTTATAACTACAGAAGAAAACACTCAGCTCAGCAACCACCTCTCCCACCAGGCCCAAAGCCATGGCCTCTTGTTGGCTGCATCCCAGCAATGTTCTTGAGGAACAACTCCTCAACTCACCAATGGATTCATTCAGTAATGAAGCAATTCAACACTGAAATAGCTTCCATACGCCTTGGAAATATTTACATAATCCCTGTCATTTCTCCAGAACTTGCTCTTCAGTTCCTTAAGACATATGATTCTGTTTTTGCATCACGTTCCTCCATTTCCAACACTGTTGATATCTTATCCCGTGGATATGTCTCAACAATATTTTCACCGTTAGGAGACCAATGGAAGAAGATGAGAAGAATTCTCACATCAGAAATACTCAATCCATCAACTCTCCATCGAATGCTTGGCCAAAGAACCGCCGAAGCCGATATTCTTTTACGCTATATTTTCACCCAAACCAGTAAAAATGGAGGAGGTGCAGTGATTAATGTTAGAAGTATAACACAACATTATTGTGGTAATATTATCAGAAGAATGCTATTCAATAGAAGATACTATGGCAATGGGAGGGAAGATGGGGGGCCAACTTTTGCAGAAGAAGAGCATAATCAAGCATTGTTGACCATTATTAGGCATGCTAATGCATTTTCTATATCAGATTTCATTCCTTGTTTGAAGTCTTTTGATTTAGATGGACATCTAAAAATTATGAAGAAGGCTTTGAATGTCCTTAAAAAATATGATGAACCCATTATAGATGAAAGAGTGCAACAATGGAAGAAAGACGAGAAAATAGAAGGGGTAGAGGACATTCTTGATATCCTCATTTCACTTAAAGATGAGAATGAAAATTCATTGTTGTCAATGGACGAGATCAAGGCTCAAATCACGGACCTACAAATTGCAACGATAGATAATCCTTCAAACGCAGTGGAATGTGTAATGGCGGAATTACTCAATCAACCAAAAATTCTTGAAAAAGCCATTGAAGAATTGGACGAAGTAGTTGGAAGAGAAAGGTTGGTTCAAGAATCTGATATCCCAAAACTCAAGTATCTCACCGCTTGTGCTCGAGAATCTTTTCGACTTCATCCATTTTCACCCTTCAACGTTCCTCACGTTTCCAACTCTGACATTGTTGTGGATGGCTACTTTATTCCTAAAGGAAGTGAAATATTGCTCAGTCGTTCAGGTCTTGGCCGAAATCCAAGGATTTGGAAGAATCCAATGAGATTTGATCCAGAACGTCATCTAAAAGATGGGACAGTTGACATGGGAATTTCAGAACCCAATTTGCGATTCATCACCTTCACTAGAGGGAGGAGAGGTTGTGTTGGTAGCTCATTGGGCACTAACATTACCATGATGTTATTTGCTAGACTTCTTCAAGGGTTTTCATGGAGTTTATTGCCAGGAATCACAAAAATAGACTTTTTTGAAACTCATGATCTCTCTCTCTCGGAGCCATTGCATTTGCATGCAAAACCACGTTTATCTCATAGTATGTACCCAAGGCTTTATTGA 1641 38.82 MEAAFLFISQLAHQNSPIAIRSKTFIVFAFMAFTSIMFFQFYNYRRKHSAQQPPLPPGPKPWPLVGCIPAMFLRNNSSTHQWIHSVMKQFNTEIASIRLGNIYIIPVISPELALQFLKTYDSVFASRSSISNTVDILSRGYVSTIFSPLGDQWKKMRRILTSEILNPSTLHRMLGQRTAEADILLRYIFTQTSKNGGGAVINVRSITQHYCGNIIRRMLFNRRYYGNGREDGGPTFAEEEHNQALLTIIRHANAFSISDFIPCLKSFDLDGHLKIMKKALNVLKKYDEPIIDERVQQWKKDEKIEGVEDILDILISLKDENENSLLSMDEIKAQITDLQIATIDNPSNAVECVMAELLNQPKILEKAIEELDEVVGRERLVQESDIPKLKYLTACARESFRLHPFSPFNVPHVSNSDIVVDGYFIPKGSEILLSRSGLGRNPRIWKNPMRFDPERHLKDGTVDMGISEPNLRFITFTRGRRGCVGSSLGTNITMMLFARLLQGFSWSLLPGITKIDFFETHDLSLSEPLHLHAKPRLSHSMYPRLY 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7194034 7196108 - Lsi06G005630.1 Lsi06g00563 665293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00563 546 PANTHER PHENYLALANINE N-MONOOXYGENASE 30 541 - -
Lsi06g00563 546 Pfam Cytochrome P450 56 528 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 Gene3D Cytochrome P450 41 539 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 30 541 - -
Lsi06g00563 546 SUPERFAMILY Cytochrome P450 56 536 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PRINTS E-class P450 group I signature 473 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PRINTS E-class P450 group I signature 350 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PRINTS E-class P450 group I signature 330 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PRINTS E-class P450 group I signature 434 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PRINTS E-class P450 group I signature 393 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00563 546 PRINTS E-class P450 group I signature 483 506 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00559 Lsi-Chr6:7135816 Lsi06g00563 Lsi-Chr6:7194034 2.22E-128 dispersed
Lsi06g00563 Lsi-Chr6:7194034 Lsi06g00565 Lsi-Chr6:7327359 0 dispersed
Lsi06g00562 Lsi-Chr6:7176065 Lsi06g00563 Lsi-Chr6:7194034 3.70E-41 tandem
Lsi06g00563 Lsi-Chr6:7194034 Lsi06g00564 Lsi-Chr6:7283364 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00563 - K12153 csv:101215911 884.019