Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00566 ATGAAAGTTTTGCTATTCATTAGTGAATCATCATATCAAAACTATGCAAAAGAATCCATAGCCATAACCTTCATTGCTATCATTTTATTCATATCTTCCATTATTTATGTTATTAGGTTTTCTCAATATTACTGCAAAAGACCTCTCTCAATCCGGCGGCTTCCACCTGGCCCAAAGCCATGGCCTCTCCTTGGCTACCTTCCAGCAATGTTGAGCAACAAAAACTTGCCAACACACCATTGGATCCATTCAATTATGAAGCAATTCAATACTGAAATTGCTTGCATCCGTCTCGGATCAAATACTCATATAATCCCTGTGACTTCTCCAGAACTCGCTCTTGAATTTCTAAAGACACACGATTCTGTCTTCAGATCACGACCTATTTCCATGACTGCTGAGATAGTGAGTCACGGATATCTCAGTACAGTTCTTTCACCCATGGGGGATCAATGGAAGAAAATGAGAAGGATACTCGTTTCCCACGTACTTAATTCTTCGACCCTCCATCAAATGCTTGGCCAAAGAACAAAGGAAGCTGATATTCTTCTATGCTATATTTTCAACTTATCTAGAAACGGTGAAGCCATCAACATAAAAAGCATTGTACGACATTACTGCAGCAACATTGTTAGAAGAATGTTGTTCAATAAAAGATACTATGGGAAAGGGAGGGAAGATGGGGGGCCAACTTTTGAAGAAGAAGACCATAATCAAGCATTGTTGTCCATTCTTAGGCATGTTAATGCATTTTCTATATCTGAGTTTATACCTTTTTTGAAGCTATTTGATCTTGATGGACATGAGAAGATAGATCTGCAACTTGCAAGCATAGATAATCCTTCAAATGCAGTGGAATGGGCAATGGCAGAGTTACTTAATCAACCAAAACTTCTCCAAAAAGCTGTTGAAGAATTAGACGAAGTAGTTGGAAGAGATAGGCTGGTTCAAGAATTTGATGTACCTAATCTCAAGTATCTTACAGCTTGTATTAGAGAATCTTTTCGACTTCATCCATTTTCACCATTCAATGTTCCTCACGTTTCCAACTCTGATATTGTTGTAGCTGGCTACTTCATCCCTAAAGGTAGCCAAGTATTACTAAGTCGTCTTGGTCTCGGTCGAAACTCAAGGATTTGGGAGGATCTAATGAGATTTAATCCAGAGCGTCATCTAAAAAATGGGACAATTGAACTGGGAATTTCAGAACCCGATCTACGATTCGTCACCTTCACTAGAGGGAGGAGAGGATGCATTGGTACATCACTTGGCACTAACATGACCATGATGCTATTTGCTAGACTTGTACAAGGATTTTCATGGAGCTTATTGTCAGGAATCACAAAGATCGATTTCTCCAAAACCGATGAATTATCTCTTAAGCCATTACATCTACATGCAGAGCCACGTTTCTCATATTATACCATTTTTCTCATCGATTGTAGTTTTTTGTTCTTGATCATAGATCTTTCTAAATTCAATAACCGATAG 1491 38.5 MKVLLFISESSYQNYAKESIAITFIAIILFISSIIYVIRFSQYYCKRPLSIRRLPPGPKPWPLLGYLPAMLSNKNLPTHHWIHSIMKQFNTEIACIRLGSNTHIIPVTSPELALEFLKTHDSVFRSRPISMTAEIVSHGYLSTVLSPMGDQWKKMRRILVSHVLNSSTLHQMLGQRTKEADILLCYIFNLSRNGEAINIKSIVRHYCSNIVRRMLFNKRYYGKGREDGGPTFEEEDHNQALLSILRHVNAFSISEFIPFLKLFDLDGHEKIDLQLASIDNPSNAVEWAMAELLNQPKLLQKAVEELDEVVGRDRLVQEFDVPNLKYLTACIRESFRLHPFSPFNVPHVSNSDIVVAGYFIPKGSQVLLSRLGLGRNSRIWEDLMRFNPERHLKNGTIELGISEPDLRFVTFTRGRRGCIGTSLGTNMTMMLFARLVQGFSWSLLSGITKIDFSKTDELSLKPLHLHAEPRFSYYTIFLIDCSFLFLIIDLSKFNNR 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7352858 7355564 - Lsi06G005660.1 Lsi06g00566 665296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00566 496 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 271 473 - -
Lsi06g00566 496 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 29 271 - -
Lsi06g00566 496 Pfam Cytochrome P450 271 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 Pfam Cytochrome P450 55 234 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS E-class P450 group I signature 418 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS E-class P450 group I signature 408 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS E-class P450 group I signature 369 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS E-class P450 group I signature 328 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS E-class P450 group I signature 112 133 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 SUPERFAMILY Cytochrome P450 55 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 Gene3D Cytochrome P450 271 472 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PANTHER PHENYLALANINE N-MONOOXYGENASE 271 473 - -
Lsi06g00566 496 PANTHER PHENYLALANINE N-MONOOXYGENASE 29 271 - -
Lsi06g00566 496 PRINTS P450 superfamily signature 276 293 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS P450 superfamily signature 418 429 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS P450 superfamily signature 409 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 PRINTS P450 superfamily signature 329 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00566 496 Gene3D Cytochrome P450 50 270 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00566 Lsi-Chr6:7352858 Lsi07g00625 Lsi-Chr7:6696377 1.15E-64 dispersed
Lsi06g00565 Lsi-Chr6:7327359 Lsi06g00566 Lsi-Chr6:7352858 0 tandem
Lsi06g00566 Lsi-Chr6:7352858 Lsi06g00567 Lsi-Chr6:7375060 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00566 - K12153 csv:101216819 657.907