Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00634 ATGGCTACTCAGGCACTTGTTTCATCTTCTTTAACCTCTTCAGTGGGTGCAGCCAGACAGAGATTAGGGGCAAAACCGTCTTTTGGATCCAACAGGAAATCAGCTTCTTTTGTTGTTAGAGCTGGAGCCACTCCTCCTGTTAAGCAAGGAGCAGACAGACAACTATGGTTCGCTTCAAAACAAAGTCTTACTTACTTGGATGGAAGTCTCCCGGGCGATTACGGGTTCGACCCATTGGGGCTATCGGACCCTGAAGGAACAGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGTGAGGTGATCAACGGGCGGTACGCGATGTTGGGAGCAGTAGGAGCCATTGCCCCAGAGATCCTTGGATCATTAGGGTTAATCCCACCCGAAACAGCCCTCCCATGGTTCAAAACAGGGGTGATCCCACCAGCAGGAACCTACAATTATTGGGCAGACCCATACACACTGTTTGTATTTGAAATGGCTCTAATGGGCTTCGCTGAACATAGAAGATTTCAAGATTGGGCCAAGCCAGGGTCCATGGGGAAACAATACTTTTTGGGGCTTGAGAAGTTCTTGGGTGGTTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCATTAGGGTTTGGAAAAGATGAGAAGTCATTGAAGGATTTGAAGCTGAAGGAAGTGAAAAATGGAAGGCTTGCAATGTTGGCAATATTAGGTTATTTTGTACAAGGTCTTGTCACTGGTGTTGGGCCTTACCAAAACCTTTTGGATCATTTGTCTGACCCAGTCAACAACAATGTTTTGACCAGCCTTAAATTCCACTAG 822 47.93 MATQALVSSSLTSSVGAARQRLGAKPSFGSNRKSASFVVRAGATPPVKQGADRQLWFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9269531 9272162 + Lsi06G006340.1 Lsi06g00634 665364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00634 273 Pfam Chlorophyll A-B binding protein 64 242 IPR022796 -
Lsi06g00634 273 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
Lsi06g00634 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 272 IPR001344 GO:0009765|GO:0016020
Lsi06g00634 273 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 272 - -
Lsi06g00634 273 Gene3D Chlorophyll a/b binding protein domain 54 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00634 Lsi-Chr6:9269531 Lsi08g01472 Lsi-Chr8:22846371 1.05E-52 dispersed
Lsi06g00634 Lsi-Chr6:9269531 Lsi06g01458 Lsi-Chr6:25126453 2.47E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00634 K08909 - csv:101202993 524.242