Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00645 ATGGATCAGACGGCTCCTAAGTTTGTAGCTGTTGGTCTGTTCTTAGTCATCACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGTGAGGTCAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAACGCTCTTTCAGATCCAGAGGCTGCTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCGTTGCATAGTCAACAGAATGATATAGAAGAACTGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCCAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGACAGTGTCGGATCTGTTGAAGACATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGACCGTGGGAAAACCGTTTTCTTGACATCAATCTGAGAGATGGAGTTATGATTCGTGAGAATGGATCATCTGAGGGCAAAAGTAACAATAAATCTCATTTAAAAACTACTGGCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCTCACTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAAAAGCTCAAGTATAAACTTGCACCTGAAAGGCCATTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTAAAAAATGCAAAGAAGCGATTATCCTTGCCCAGTAATGATCCTGGTAGTCAAAATCAAACGATGAGAAATTCCACTGGCAAAGCGACCGTGGCCAAGTCAATCAGCGATAAACCGAAGTCAATTTCCAGATCGGTTGACTCAAAATCTGCAAAATCTAGATCGCAGAATTGA 1368 42.91 MDQTAPKFVAVGLFLVITVECTMGVSGKWFKALVGSKKSEKSQSSEHDENVRSVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPEAASIPSDSLQTYDALHSQQNDIEELAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNNKSHLKTTGKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKYKLAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPSNDPGSQNQTMRNSTGKATVAKSISDKPKSISRSVDSKSAKSRSQN 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9554658 9565173 - Lsi06G006450.1 Lsi06g00645 665375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00645 455 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Lsi06g00645 455 MobiDBLite consensus disorder prediction 380 455 - -
Lsi06g00645 455 MobiDBLite consensus disorder prediction 301 354 - -
Lsi06g00645 455 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Lsi06g00645 455 PANTHER IQ-DOMAIN 5-RELATED 15 423 - -
Lsi06g00645 455 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Lsi06g00645 455 PANTHER IQ-DOMAIN 5-RELATED 15 423 - -
Lsi06g00645 455 MobiDBLite consensus disorder prediction 408 437 - -
Lsi06g00645 455 MobiDBLite consensus disorder prediction 299 354 - -
Lsi06g00645 455 Gene3D - 116 164 - -
Lsi06g00645 455 SMART iq_5 140 161 IPR000048 GO:0005515
Lsi06g00645 455 SMART iq_5 117 139 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00645 - - - csv:101204117 745.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02925 Lsi-Chr2:35454079 Lsi06g00645 Lsi-Chr6:9554658 4.99E-37 dispersed
Lsi04g00055 Lsi-Chr4:696719 Lsi06g00645 Lsi-Chr6:9554658 2.00E-41 dispersed
Lsi05g00106 Lsi-Chr5:1805842 Lsi06g00645 Lsi-Chr6:9554658 2.26E-29 dispersed
Lsi06g00645 Lsi-Chr6:9554658 Lsi07g00304 Lsi-Chr7:3259617 1.60E-39 dispersed
Lsi06g00645 Lsi-Chr6:9554658 Lsi04g01418 Lsi-Chr4:21947617 8.12E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00645 . 23 430 IQD Protein Family AT3G22190 58.0 7.0e-97 351.3
Lsi04g01418 . 1 438 IQD Protein Family AT2G26180 61.1 3.8e-119 425.2
Lsi01g00265 . 61 334 IQD Protein Family AT2G33990 51.8 1.7e-61 233.0
Lsi07g00304 . 40 215 IQD Protein Family AT2G33990 55.9 2.0e-49 193.0
Lsi01g00265 . 61 282 IQD Protein Family AT3G15050 50.5 1.1e-55 213.8
Lsi07g00304 . 43 216 IQD Protein Family AT3G15050 62.7 5.3e-55 211.5
Lsi09g00803 . 124 471 IQD Protein Family AT5G13460 50.4 1.2e-75 280.8
Lsi06g00223 . 1 391 IQD Protein Family AT3G16490 51.0 2.9e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00645 Lsi_Chr06 FPKM 16.778332 17.734348 16.743605 16.465719 23.40522 24.173895 22.465918 19.412128 18.699785 17.35438