Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00645 ATGGATCAGACGGCTCCTAAGTTTGTAGCTGTTGGTCTGTTCTTAGTCATCACTGTTGAATGCACCATGGGTGTTTCTGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACATGATGAAAATGTGAGGTCAGTCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTTAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAACGCTCTTTCAGATCCAGAGGCTGCTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCGTTGCATAGTCAACAGAATGATATAGAAGAACTGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCCAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGACAGTGTCGGATCTGTTGAAGACATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCTGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGACCGTGGGAAAACCGTTTTCTTGACATCAATCTGAGAGATGGAGTTATGATTCGTGAGAATGGATCATCTGAGGGCAAAAGTAACAATAAATCTCATTTAAAAACTACTGGCAAGAAGACAAACTTAGTAACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCTCACTCTGATGGATGTGGTTCGTCATCTCCCACTAAGTCAGCTGGCACTGTAGAAGTATCCAGTGCACAGATTCAAAAGCTCAAGTATAAACTTGCACCTGAAAGGCCATTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCACATAGCAATCCAAAAGAGAGATCCACACCATTGGTAAAAAATGCAAAGAAGCGATTATCCTTGCCCAGTAATGATCCTGGTAGTCAAAATCAAACGATGAGAAATTCCACTGGCAAAGCGACCGTGGCCAAGTCAATCAGCGATAAACCGAAGTCAATTTCCAGATCGGTTGACTCAAAATCTGCAAAATCTAGATCGCAGAATTGA 1368 42.91 MDQTAPKFVAVGLFLVITVECTMGVSGKWFKALVGSKKSEKSQSSEHDENVRSVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPEAASIPSDSLQTYDALHSQQNDIEELAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNNKSHLKTTGKKTNLVTDQSNLSSQKTAASHSDGCGSSSPTKSAGTVEVSSAQIQKLKYKLAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPSNDPGSQNQTMRNSTGKATVAKSISDKPKSISRSVDSKSAKSRSQN 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9554658 9565173 - Lsi06G006450.1 Lsi06g00645 665375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00645 455 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Lsi06g00645 455 MobiDBLite consensus disorder prediction 380 455 - -
Lsi06g00645 455 MobiDBLite consensus disorder prediction 301 354 - -
Lsi06g00645 455 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Lsi06g00645 455 PANTHER IQ-DOMAIN 5-RELATED 15 423 - -
Lsi06g00645 455 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Lsi06g00645 455 PANTHER IQ-DOMAIN 5-RELATED 15 423 - -
Lsi06g00645 455 MobiDBLite consensus disorder prediction 408 437 - -
Lsi06g00645 455 MobiDBLite consensus disorder prediction 299 354 - -
Lsi06g00645 455 Gene3D - 116 164 - -
Lsi06g00645 455 SMART iq_5 140 161 IPR000048 GO:0005515
Lsi06g00645 455 SMART iq_5 117 139 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02925 Lsi-Chr2:35454079 Lsi06g00645 Lsi-Chr6:9554658 4.99E-37 dispersed
Lsi04g00055 Lsi-Chr4:696719 Lsi06g00645 Lsi-Chr6:9554658 2.00E-41 dispersed
Lsi05g00106 Lsi-Chr5:1805842 Lsi06g00645 Lsi-Chr6:9554658 2.26E-29 dispersed
Lsi06g00645 Lsi-Chr6:9554658 Lsi07g00304 Lsi-Chr7:3259617 1.60E-39 dispersed
Lsi06g00645 Lsi-Chr6:9554658 Lsi04g01418 Lsi-Chr4:21947617 8.12E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00645 - - csv:101204117 745.732