Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00651 ATGGAGCATTTCCTTATCTCTCTCTTAATACTCTTCCTCTTCTTCCTCTCTCTCACTTTCTTCATCCTCTTCCACAACCACAGATCCTTGTTTTCCTATCCCAACATTCCTCCCGGTTCCATCGGCCTTCCCATCCTCGGCGAGAGCCTCGAGTTCTTATCCACCGGCTGGAGAGGCCACCCTGAGAAGTTCATCTTCGACCGTTTGAATAAGTATAAGTCTGATGTCTTCAAAACCTCCATCGTCGGCGTTCCGGCCGCCATTTTCTGTGGCCCTGCCTGCAACAAGTTCCTCTTCTCTAACGAGAATAAACTCGTTACTCCTTGGTGGCCGGACTCCGTCAACAAGATCTTCCCCTCTTCTACTCAGACTAGCTCCAAAGAAGAAGCTAAGAAACTCAAGAAATTCCTCCCGCAGTTCCTTAAACCCGAAGCGCTTCAGCGTTATATTGGAATTATGGATGAACTTGCTCAACGCCATTTCGCTTCCTTTTGGGAGAACAGAGAAGAGGTTCATGTGTTTCCTCTCGCTAAAAGCTTCACATTCTCGCTGGCGTGCCGATTGTTCATGAGCATGGAGGATACAATCCACGTGGAGAGATTATCTGGACCATTTGAGCACATTGCAGCAGGAATCATATCGATGCCTATCGATCTACCAGGAACACCGTTCAATCGAGCAATAACGGCGTCGAAGTTCATCAGAAAGGAACTGGTGGCGATCGTGAGGCAGAGGAAAATGGATCTGGCAGAAGGAAAGGTGTCGGCGACGCAGGACATTCTGTCTCACATGCTTCTCACGTGCGATGAGAACGGATTGTACATGAACGAATCCGATATCGCCGATAAGATTCTGGGACTGTTGATTGGTGGCCATGACACTGCCAGTGTCGCATGCACCTTCATCGTTAAGTTTCTTGCTGAACTTCCTCATATCTACGACGGCGTCTACACAGAGCAAATGGAAATAGCAAAAGCAAAAGCCCCAGGGGAGACATTGAAGTGGGAAGACATTAAGAAGATGAAACATTCATGGAAAGTGGCCTGTGAGGTTCTAAGACTTGCTTCCCCACTCCAAGGTGCCTTTAGGGAAGCCTTAAACGACTTCGTTTTTAATGGCTTCTACATTCCCAAGGGCTGGAAGCTATACTGGAGTTCAAACTCAACACACAAAAATCCAGAGTATTTCCCAGAGCCCTATAAGTTTGAGCCAGCAAGATTTGAAGGGAATGGGCCATTGCCCTACACCTTTGTGCCCTTTGGGGGAGGGCCAAGGATGTGCCCTGGAAAAGAGTATGCAAAGCTTGAGATTTTGGTGTTCATTCATAATTTGGTCAAGAGATTCAAATGGACAAAGCTACTTGAAAAGGAGAATATCATTGTTGACCCAATGCCAATCCCTCAAAAAGGTCTCCCTGTTCGCCTTTTTCCTCATCAACCTCGCTCTCTTTAG 1452 47.18 MEHFLISLLILFLFFLSLTFFILFHNHRSLFSYPNIPPGSIGLPILGESLEFLSTGWRGHPEKFIFDRLNKYKSDVFKTSIVGVPAAIFCGPACNKFLFSNENKLVTPWWPDSVNKIFPSSTQTSSKEEAKKLKKFLPQFLKPEALQRYIGIMDELAQRHFASFWENREEVHVFPLAKSFTFSLACRLFMSMEDTIHVERLSGPFEHIAAGIISMPIDLPGTPFNRAITASKFIRKELVAIVRQRKMDLAEGKVSATQDILSHMLLTCDENGLYMNESDIADKILGLLIGGHDTASVACTFIVKFLAELPHIYDGVYTEQMEIAKAKAPGETLKWEDIKKMKHSWKVACEVLRLASPLQGAFREALNDFVFNGFYIPKGWKLYWSSNSTHKNPEYFPEPYKFEPARFEGNGPLPYTFVPFGGGPRMCPGKEYAKLEILVFIHNLVKRFKWTKLLEKENIIVDPMPIPQKGLPVRLFPHQPRSL 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9732088 9741186 + Lsi06G006510.1 Lsi06g00651 665381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00651 483 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 420 429 IPR017972 GO:0005506|GO:0016705
Lsi06g00651 483 Gene3D Cytochrome P450 27 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PRINTS P450 superfamily signature 418 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PRINTS P450 superfamily signature 427 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 SUPERFAMILY Cytochrome P450 28 477 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PANTHER CYTOCHROME P450 26 8 476 - -
Lsi06g00651 483 Pfam Cytochrome P450 37 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PANTHER BETA-AMYRIN 28-OXIDASE-LIKE 8 476 - -
Lsi06g00651 483 PRINTS E-class P450 group I signature 417 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00651 483 PRINTS E-class P450 group I signature 427 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01209 Lsi-Chr4:18629166 Lsi06g00651 Lsi-Chr6:9732088 7.24E-117 dispersed
Lsi04g01210 Lsi-Chr4:18669643 Lsi06g00651 Lsi-Chr6:9732088 1.42E-92 dispersed
Lsi06g00651 Lsi-Chr6:9732088 Lsi06g01257 Lsi-Chr6:23155590 0 dispersed
Lsi08g01473 Lsi-Chr8:22849026 Lsi06g00651 Lsi-Chr6:9732088 9.78E-61 dispersed
Lsi06g00651 Lsi-Chr6:9732088 Lsi04g01563 Lsi-Chr4:23194296 6.22E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00651 K20667 - csv:101206033 886.715