Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00688 ATGGTGGGGAATGGTGTGACGGACCAAAAGTTTGATGGCAATGCTCTCGTCCCCTTTGCATATGGCATGGCCCTCATCTCACACGCTATCTTTAAGGAAGCCGAAGCATCTTGTGGTGGAAATTACTACAGCCCTCAAACTAACGACTGCTTTGACAAGCTTGACCGAGTTGACCAGGCTCTAGATGGATTAAACATATACGACATATTAGAGCCATGTTATCACACACCAAACACAAAAACAAACACAAATTTGCCACCGAGTTTCCAACAACTTGGGAAGACGAAGAAGCCTTTGGCCGTGAGGAAGCGGATGTTTGGTCGTGCTTGGCCGTTTAGGGCGCCAGTGCGCGACGGCGTTGTCCCTCTTTGGCCTGAGCTAGCTCAGTCTGATGACAAATCCACCGTCCCATGTATGGACGATGAAGTTGCAACAACATGGTTGAACGACAAATCCGTGAGAGCAGCCATTCACGCTGACCCGCAAAGTGTGATAGGTCCATGGGAGCTATGTACTCGTAGGATAAGCTACAGTCACGATGCTGGAAGTATGATTCCTTATCATAGGAACCTTACTTCTCAAGGTTATAGAGCCCTTATTTTCAGTGGAGACCATGATATGTGTGTGCCATATACTGGAAGCCAAGCATGGACTTCTTCACTTGGATACAAAATTGTTGATGAATGGAGGCCATGGCTCTCCCATTCCCAAGTCGCAGGGTAA 723 47.72 MVGNGVTDQKFDGNALVPFAYGMALISHAIFKEAEASCGGNYYSPQTNDCFDKLDRVDQALDGLNIYDILEPCYHTPNTKTNTNLPPSFQQLGKTKKPLAVRKRMFGRAWPFRAPVRDGVVPLWPELAQSDDKSTVPCMDDEVATTWLNDKSVRAAIHADPQSVIGPWELCTRRISYSHDAGSMIPYHRNLTSQGYRALIFSGDHDMCVPYTGSQAWTSSLGYKIVDEWRPWLSHSQVAG 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10864102 10880403 + Lsi06G006880.1 Lsi06g00688 665418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00688 240 Gene3D - 138 176 - -
Lsi06g00688 240 SUPERFAMILY alpha/beta-Hydrolases 1 240 IPR029058 -
Lsi06g00688 240 Pfam Serine carboxypeptidase 1 240 IPR001563 GO:0004185|GO:0006508
Lsi06g00688 240 PANTHER CARBOXYPEPTIDASE 1 240 - -
Lsi06g00688 240 Gene3D alpha/beta hydrolase 1 85 IPR029058 -
Lsi06g00688 240 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 240 IPR001563 GO:0004185|GO:0006508
Lsi06g00688 240 Gene3D - 184 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00688 K16296 SCPL-I; serine carboxypeptidase-like clade I [EC:3.4.16.-] - csv:101209433 421.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02190 Lsi-Chr2:28385913 Lsi06g00688 Lsi-Chr6:10864102 2.00E-114 dispersed
Lsi05g01083 Lsi-Chr5:18451627 Lsi06g00688 Lsi-Chr6:10864102 1.25E-29 dispersed
Lsi06g00688 Lsi-Chr6:10864102 Lsi04g01473 Lsi-Chr4:22459901 1.93E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g874 . . . . Bpe15g00448 . . . Cmo04g00855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00067 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00688 . . Cme02g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002964 2 3 2 2 2 1 1 1 1 2 2 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00688 Lsi_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0