Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00689 ATGGGATCCTGCTTGTCTGCAGGGAGTAAGAGGGCCATTCCTGGTTCCCCTGTATCTCCTGTGCTGGGAGCAAGTGAACAGAAAGACTTAGACAATGTGTTTGAGCAGCAGAATCAGAGTGAAGCAACAGTACACAGAATTCCTGGTAGAATGTTCTTGAATGGGTCCAGTGAAGTTGCTTCACTTCATACACAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGATTGTATGGGAGAATTTTGGCTCCAGAACAGATACATTCTTTTGTGGAGTTTTTGATGGCCATGGTCCTTATGGTCATCTCGTCGCAAAAAGGGTGAGAGATTCTCTTCCCCTGAAACTGACCGCACATTGGGAAGCTAATGAGGATATTTCAGAAGAGTTAGGCTGTAAAACAGAAGCTGTGAACAATGAAGATTCTACCTTAGAAATTAGTTGGAAGGAAGCTAGATCCCCCCTTATGCAGCCCGAAATTTCTGAAAAACTGAAGGAATCATTTCTGAAGGCTTTTAAGATAATGGATGGAGAACTCAAAATTCAACCAAGTATCGATTGCTTCTGTAGTGGGACAACAGCAGTGGCTCTTGTTAAGCAGGGTCGGGATCTCGTTATTGGAAACGTCGGGGACTCTCGGGCTGTGCTGGGTACCAGAGATGAGGATAACTCTCTCCAAGCAGTTCAGTTGACCATAGATCTCAAGCCAGATATTCCAGCGGAAGCTGAGAGAATTCTCAAATGCAAAGGTCGGGTATTTGCCCATCAGGATGAACCAGAAGTTGCTAGAGTATGGCTTCCAAACAATGATTCCCCTGGGCTGGCGATGGCTCGATCTTTTGGAGACTTTTGCCTCAAGGATTTCGGTCTAATTTCTGTTCCTGAAATATCATATCGTTTTCTGTCTGACAAGGATGAGTTTATAGTTTTAGCTACAGACGGAATTTGGGATGTTCTCTCAAACAAAGAGGTGGTTGACATTGTAGCATCAGCCCCAGCTCGTTCTGCAGCCCGATCATTAGTCGAATCTGCAACTAAAGCATGGAGATGCAAGCTTCCTTCTTCCAACATTGACGACTGTGCTGTTGTCTGCCTCTTCCTTGACTCGAACTTGAACGTTATGGCATCAGAGACAAATATTAAATACCAGGAGGTTAATTCAGCAATCCAAGTCGATACAGCCGTGGTAGATGATGATGTCTCTGGAGTAGACCAGGAGTGGTAG 1224 44.93 MGSCLSAGSKRAIPGSPVSPVLGASEQKDLDNVFEQQNQSEATVHRIPGRMFLNGSSEVASLHTQQGKKGMNQDAMIVWENFGSRTDTFFCGVFDGHGPYGHLVAKRVRDSLPLKLTAHWEANEDISEELGCKTEAVNNEDSTLEISWKEARSPLMQPEISEKLKESFLKAFKIMDGELKIQPSIDCFCSGTTAVALVKQGRDLVIGNVGDSRAVLGTRDEDNSLQAVQLTIDLKPDIPAEAERILKCKGRVFAHQDEPEVARVWLPNNDSPGLAMARSFGDFCLKDFGLISVPEISYRFLSDKDEFIVLATDGIWDVLSNKEVVDIVASAPARSAARSLVESATKAWRCKLPSSNIDDCAVVCLFLDSNLNVMASETNIKYQEVNSAIQVDTAVVDDDVSGVDQEW 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10884609 10889220 + Lsi06G006890.1 Lsi06g00689 665419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00689 407 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 382 - -
Lsi06g00689 407 Pfam Protein phosphatase 2C 135 333 IPR001932 -
Lsi06g00689 407 ProSiteProfiles PPM-type phosphatase domain profile. 59 367 IPR001932 -
Lsi06g00689 407 SUPERFAMILY PP2C-like 56 368 IPR036457 -
Lsi06g00689 407 MobiDBLite consensus disorder prediction 1 22 - -
Lsi06g00689 407 SMART PP2C_4 48 365 IPR001932 -
Lsi06g00689 407 CDD PP2Cc 59 367 IPR001932 -
Lsi06g00689 407 Gene3D - 54 369 IPR036457 -
Lsi06g00689 407 PANTHER ALPHABET, ISOFORM E-RELATED 1 382 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00707 Lsi06g00689 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00689 Lsi-Chr6:10884609 Lsi11g00963 Lsi-Chr11:15029915 0 dispersed
Lsi06g00689 Lsi-Chr6:10884609 Lsi11g01535 Lsi-Chr11:23687834 7.45E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00689 - - cmax:111498595 641.343