Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00691 ATGGTTTTCACATTGGGAGCTTCTTTCCCTATTATTCACGCCAACAGGCTCCCCACCGCCGTCGTCACCGCCGCGGCCACTACCACCAATCCAAGCAGCAACAGCTCCACTTCCCATTTGTTCGAAGCCACCTTCATCCGTCGCGCCGCTGAGATTGCCGATAAGTCTGCCGGATTCACCGCTCCACATCCCAACTATGGCTGCATCATCACCACCACGTCGGGTGACATCGCCGGCGAGGGCTTCCTTTACGGTCAGGGTACCGAATCTGCTGAGCTTCAAGCAGTTGAAGCTGCCGGCGAGGGGTGCCGTGGTGCTACGGCGTTTCTCAATTTGGAGTCTAGTGATTGCCCCAGCGACAATACTGCCGTGGCTGCTTTAGTCCAGGCAGGGATTGAAAGGGTAGTTGTTGGAATGCGACATCCTTTGCAACATCTAAGAGGAAATGCTGTGAGAGCTTTAAGAAGTCAAGGGATTCTCGTTGATGTTCTTGGAGAGGATCTAAAGAGTAGAGCCGTAGAGGAAGCTCGAAAAGCATGTCTTCTTGTTAATGCTCCATTGATATGTAAAGCTGCTTCTCGAGTGCCTTTCTCTGTGCTTAAATATGCCATGACCCTTGATGGGAAAATTGCTGCAAGTTCTGGTCATGCAGCATGGATTAGTGGTGTTTCATCTAGACAGCGAGTTTTTCAATTACGAGGAAGAAGTGATGCTGTTATAGTAGGGGGCAATACTGTACGCAGGGATGATCCTAGACTGACTGCAAGACATGGTGGTGGGCATATTCCTCTACGTGTTGTGATGTCAAGGACTCTCAATCTTCCTGAACAAGCAAATGTTTGGGATACAAAGGGTATGTCAACCATGGTTGTAACGCAAAGGGGTGCTAAAAGGAGTTTCCAGAAACTGCTTGCATCAAAAGGAGTTGAAGTAGTGGAGTTTGATAATCTAAACCCTCGAGATGTAATGGAATATTTTCATGATCGTGGATTTCTTTCAATTTTGTGGGAGTGCGGGGGAACACTTGCAGCTTCAGCCATTGCGTGTGGAGTAATACATGAGGGTCAAGCGAGTTGTCCCGTGAGATTAGTCGAGGTGCGCGTTTTTGCATTTGTTGCTCCTAAGATTATAGGGGGGAGGAATGCCCCATCTCCTGTCGGTGAGCTTGGGATGGTTGAAATGTCTCAAGCTTTGGAACTAATTGATGTTGAATATGAGAAGGTTGGAAAGGACATGTTAGTTAGCGGATTTCTTCAACCAATATTAGATGTTGCTCCAGTAATACCATCCTGTGATGAAACCATTGCAATTGACCCAACAGTTACTCCCTATGAACCAAGTATTATATTCTTTTACAAAACATGGGATCCTTATGGCGCTTTTTCGAACTTTTCACGTCACCCCATTCAACTCACTGATGAAAATGGCAATGATTGCACTTGGTTGACTGTAGAGCATTATTATCAGGCTCACAAATTCATCAGTATTGATGATCCTGTAGCTCAGGATTGTGTGGAAAAGATAAAATCAGCAAGAAGTCCAGAGGAAGCAGCAAGGATAGGAAGATCAATGCAGAGGCAGCACCCTAAAATGATACGATCTGATTGGCGAACTGCCAAACTCGACATTATGTACCGAGCACTAAAATGCAAATTTTCAAGTTACCCTCATCTGAAATCTATGCTGCTATCAACTGCTGGATCTGTTCTTGTTGAAGCATCGCCACATGATCTTTTCTGGGGTGGAGGCCGAGATGGAGAAGGTCTTAACTACCTTGGAAGACTTCTAATGCAACTGAGAGCTGAGTTCCTTGGCCAGTCGTCAACACCGAACAGTAGCAGCACAGAGTTCAACTGA 1857 46.31 MVFTLGASFPIIHANRLPTAVVTAAATTTNPSSNSSTSHLFEATFIRRAAEIADKSAGFTAPHPNYGCIITTTSGDIAGEGFLYGQGTESAELQAVEAAGEGCRGATAFLNLESSDCPSDNTAVAALVQAGIERVVVGMRHPLQHLRGNAVRALRSQGILVDVLGEDLKSRAVEEARKACLLVNAPLICKAASRVPFSVLKYAMTLDGKIAASSGHAAWISGVSSRQRVFQLRGRSDAVIVGGNTVRRDDPRLTARHGGGHIPLRVVMSRTLNLPEQANVWDTKGMSTMVVTQRGAKRSFQKLLASKGVEVVEFDNLNPRDVMEYFHDRGFLSILWECGGTLAASAIACGVIHEGQASCPVRLVEVRVFAFVAPKIIGGRNAPSPVGELGMVEMSQALELIDVEYEKVGKDMLVSGFLQPILDVAPVIPSCDETIAIDPTVTPYEPSIIFFYKTWDPYGAFSNFSRHPIQLTDENGNDCTWLTVEHYYQAHKFISIDDPVAQDCVEKIKSARSPEEAARIGRSMQRQHPKMIRSDWRTAKLDIMYRALKCKFSSYPHLKSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRAEFLGQSSTPNSSSTEFN 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10918550 10926026 - Lsi06G006910.1 Lsi06g00691 665421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00691 618 Gene3D - 440 609 IPR037238 -
Lsi06g00691 618 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 40 162 IPR002125 -
Lsi06g00691 618 Gene3D Cytidine Deaminase, domain 2 41 172 - -
Lsi06g00691 618 Gene3D Dihydrofolate Reductase, subunit A 188 417 IPR024072 -
Lsi06g00691 618 CDD NADAR 447 601 IPR012816 -
Lsi06g00691 618 SUPERFAMILY YbiA-like 436 604 IPR037238 -
Lsi06g00691 618 TIGRFAM ribofla_fusion: conserved hypothetical protein 449 602 IPR012816 -
Lsi06g00691 618 Pfam NADAR domain 450 603 IPR012816 -
Lsi06g00691 618 SUPERFAMILY Cytidine deaminase-like 43 163 IPR016193 GO:0003824
Lsi06g00691 618 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 47 413 IPR004794 GO:0008835|GO:0009231
Lsi06g00691 618 TIGRFAM ribD_Cterm: riboflavin-specific deaminase C-terminal domain 195 415 IPR011549 GO:0008703|GO:0009231|GO:0050661
Lsi06g00691 618 SUPERFAMILY Dihydrofolate reductase-like 195 415 IPR024072 -
Lsi06g00691 618 Pfam RibD C-terminal domain 198 413 IPR002734 GO:0008703|GO:0009231
Lsi06g00691 618 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRR, CHLOROPLASTIC 19 424 - -
Lsi06g00691 618 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 19 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00691 K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] - csv:101206129 1135.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00691 Lsi-Chr6:10918550 Lsi09g01560 Lsi-Chr9:23726486 1.82E-14 dispersed
Lsi06g00690 Lsi-Chr6:10892894 Lsi06g00691 Lsi-Chr6:10918550 2.38E-60 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01013 Cam03g1067 Cec03g1064 Cco03g1059 Clacu03g1038 Cmu03g1628 Cre03g1329 Lsi06g00691 . Chy02g00677 Cme02g00904
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003622 1 2 1 1 1 1 2 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 3 2 2 2 2 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00691 Lsi_Chr06 FPKM 3.006587 2.926802 1.837377 2.106104 5.485776 5.5639 4.576467 3.25021 3.010557 3.10563