Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00693 ATGGGAGACGCCCTTCCTGATGCTGCCATGGACGCTGTCCAAAAGCGTCTCATGTTCGACGACGAGTGCATTTTAGTGGATGAGAATGACCATGTTGTTGGTCATGAATCCAAGTATAACTGTCACTTGATGGAAAATATCGAATCTAAGAACTGGCTGCATCGCGCTTTCAGTGTCTTTCTATTCAATTCCAAATATGAATTGCTTCTTCAGCAACGATCTGCGACAAAAGTGACATTTCCGCTTGTCTGGACGAACACTTGCTGCAGTCATCCATTGTATAGAGAATCTGAACTCATTGAGGAAGATGCTCTTGGTGCAAGGAATGCTGCCCAGAGGAAGCTTTTGGACGAACTCGGTATTCCTGCAGAAGACGTTCCAGTCGACCAGTTCACTCCCCTCGGTCGCATGCTATACAAGGCACCCTCTGATGGAAAATGGGGGGAGCATGAATTGGACTATCTCCTCTTCATTGTTCGAGACGTCAATGTGAACCCGAACCCGGACGAAGTGGCCGACGTGAAATACGTAAACAAGGAGCAGTTAAAGGAGCTTCTAAGAAAAGCAGATGCTGGAGAAGAGGGGTTGAAGCTCTCCCCTTGGTTCAGGCTTGTTGTGGACAACTTTTTGTTCAATTGGTGGGATCATGTGGAGAAGGGGACTCTCAAGGAAGCTGCTGACATGAAAACAATTCACAAGTTGACTTAA 708 46.75 MGDALPDAAMDAVQKRLMFDDECILVDENDHVVGHESKYNCHLMENIESKNWLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGARNAAQRKLLDELGIPAEDVPVDQFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADVKYVNKEQLKELLRKADAGEEGLKLSPWFRLVVDNFLFNWWDHVEKGTLKEAADMKTIHKLT 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10998062 11001912 + Lsi06G006930.1 Lsi06g00693 665423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00693 235 Pfam NUDIX domain 53 191 IPR000086 -
Lsi06g00693 235 ProSiteProfiles Nudix hydrolase domain profile. 52 204 IPR000086 -
Lsi06g00693 235 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE I-LIKE 2 234 - -
Lsi06g00693 235 CDD IPP_Isomerase 20 207 IPR011876 GO:0004452|GO:0008299
Lsi06g00693 235 PANTHER ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE 2 234 - -
Lsi06g00693 235 SUPERFAMILY Nudix 22 217 IPR015797 -
Lsi06g00693 235 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 2 234 - -
Lsi06g00693 235 TIGRFAM IPP_isom_1: isopentenyl-diphosphate delta-isomerase 23 205 IPR011876 GO:0004452|GO:0008299
Lsi06g00693 235 PIRSF Isopentenyldiphpt_isom 2 230 IPR011876 GO:0004452|GO:0008299
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00693 K01823 idi, IDI; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] - csv:101209923 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00693 Lsi-Chr6:10998062 Lsi11g00872 Lsi-Chr11:11302831 3.22E-128 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00714 . . . . . . . . . Cla03g01017 Cam03g1069 Cec03g1070 Cco03g1061 Clacu03g1040 Cmu03g1630 Cre03g1331 Lsi06g00693 . . Cme02g00907
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001962 2 2 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 2 3 2 2 3 2 2 2 2 2 3 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00693 Lsi_Chr06 FPKM 0.354659 0.314541 0.0 0.0 0.0 0.0 0.0 0.051791 0.0 0.0