Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00700 | ATGGTTGAAAGGTCTGAGACCCGATCAGCTTCTTCATCACCATTGTCATCTAGGTCCCCATCTGAACCTGTCCATGTTGAGCATTGTGGCTCTACCTCAGGAAATGATGTGAAAAATGTGAGAATTCAAAGTGCTCAAAGTCCTATAGGTGATTCAAGAAAGAGAAACATCAAGGGTAAAGAGGCAACCAAAATGGTAATGAAAATCAAATCTGAGAGGGTTGTCCTTAGACATCAGGATTTGAAAGGAAAGAAAGAAATCCAAAGTTTGTTTAATAATGTCATTGAAGAGACCGCAAGCAAGCTTGCACAGACCAGGAAGAGTAAGGTCAAGGCTTTGGTTGGTGCCTTTGAAACTGAAGCTGGCATTGATCGTCAAGCCTTTGAATCAGAGAAAACGTTGATGGATTTTGAATTCCTGCCTGATTTTCCAAAAGAGGCTTCTGTATTGAAGTATGAAATTGCTCCATCCACTGATAATAGTTATTTTGATGGCAAGATTGCTAATGGCAACTGTGAGAATATAGAAAGTTGTCTTTCTTCTATAGCTACTAATCAACCATGTATACCTGAAGAATCAACAAAAGGAGATGACATTGAGACGCAGCATCCTTTAGAAGATGAACAGAAAGGGGCTTACATTCCTATGGGAATATTAAGGACATCAGAAGATGGATACAACTGGAGGAAATATGGACAGAAACAGGTCAAAGGTAGCGAATATCCAAGAAGCTACTATAAATGTACACATCCAAATTGTCTAGTAAAGAAAAAGGTGGAGCGATCTCTTGATGGTCATATAACAGAAATCATCTATAAGGGTGCTCATAATCATGCAAAACCTGATCCCAATCGTCGAGCCATGCTTGGATCCGTGCCAACTCCAGGTGATACTCCAGATATTGGTGAAGGTGGTGGAAACCGTTCCAAACTTGAAGCTGGGCTGACATGGAGAAACACTCAATATGGGGTGAAGGATATCAAACTTATCTCAGATTGTAGTATTGTTGATGGTCTGGAGAGGACATCCTCCGTATCAGCTGTGACTGAGCTTGCTGATCCATTGTTAAATCCCCAAGGGAAAACTGTTGGGGTTCTTGAATCAGTGGGAACACCAGAGCTTTCATCCACACTTGCTAGTCATGATGATGATGATGGTGGTGGCGGTGACGATGATGATCTTACAACTCAGGGAAGTATTTCAGTTTGCACAGAAGCTGATGATGCCGAACCTGAATTGAAAAGAAGGCGAAAAGAGGGCAGTTCAATTGAGACAAACTTGGCTTCAAGATCTGTTCGTGAACCGAGAGTAGTTGTCCAAATTGAAACTGAAATTGACATACTTGAAGATGGGTATCGGTGGCGGAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGCACAAGTGCAGGCTGTGTAGTAAGGAAACATGTCGAGAGAGCATCACATGATCTGAAATGTGTTATTACAACATACGAAGGAAAACACAATCATGAAGTGCCTGCAGCAAGAAATAGCAGTCAAGTAAACTCGAGTAATGGCAATGCCCAACCGTCTGCTTCTCATGTGCAACCAAACATGGGTTTGTCCAGAAACTCGAACGTCCCAAAGTCCGAAACACAAATTCAAGATCTTGCCGCTCAGTTTTATCCAAAACCGGAATTTAACCACGACTATCAGAGGTCTGGTTGTTTTGACACTTTTACGAACGATATGAAACTTGGAGCTCCTTCATTCTGTCAAATGAAGTTCCCTCCACTCCGAAACACCTTGCCTTATAGTTCCTTTGGATTAAATTCAAAGCATCCTTCAACGAGTATCTCTGGTTCTTTGGCATCTGTGGTCCCGGACTTTCCAATTTCCTTGCCATTGAACCAAAACCTTTCAGCTTCTGGTTACGATTTTACCAATGGAAGACCAATACCACCATTTCAGGTTTTCCTAGCTGGTCAGCAGCTGAGGGAGACAGATAGATTCCTCACACCCAAACAGGAGCACGACGACAATAACATCGGTGCTTCGTTCCAACCAGTTGTTGATAGTTCGAGTGGATCTTCATCGTCATCGGTTTCATCAGTTTATCAACAAATGATGGGAAATTTTCCATAG | 2130 | 42.02 | MVERSETRSASSSPLSSRSPSEPVHVEHCGSTSGNDVKNVRIQSAQSPIGDSRKRNIKGKEATKMVMKIKSERVVLRHQDLKGKKEIQSLFNNVIEETASKLAQTRKSKVKALVGAFETEAGIDRQAFESEKTLMDFEFLPDFPKEASVLKYEIAPSTDNSYFDGKIANGNCENIESCLSSIATNQPCIPEESTKGDDIETQHPLEDEQKGAYIPMGILRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSLDGHITEIIYKGAHNHAKPDPNRRAMLGSVPTPGDTPDIGEGGGNRSKLEAGLTWRNTQYGVKDIKLISDCSIVDGLERTSSVSAVTELADPLLNPQGKTVGVLESVGTPELSSTLASHDDDDGGGGDDDDLTTQGSISVCTEADDAEPELKRRRKEGSSIETNLASRSVREPRVVVQIETEIDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCVVRKHVERASHDLKCVITTYEGKHNHEVPAARNSSQVNSSNGNAQPSASHVQPNMGLSRNSNVPKSETQIQDLAAQFYPKPEFNHDYQRSGCFDTFTNDMKLGAPSFCQMKFPPLRNTLPYSSFGLNSKHPSTSISGSLASVVPDFPISLPLNQNLSASGYDFTNGRPIPPFQVFLAGQQLRETDRFLTPKQEHDDNNIGASFQPVVDSSSGSSSSSVSSVYQQMMGNFP | 709 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11115700 | 11120378 | + | Lsi06G007000.1 | Lsi06g00700 | 665430 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00700 | 709 | ProSiteProfiles | WRKY domain profile. | 223 | 281 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | ProSiteProfiles | WRKY domain profile. | 443 | 508 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | Pfam | Plant calmodulin-binding domain | 49 | 119 | IPR012417 | GO:0005516 | |
Lsi06g00700 | 709 | Gene3D | WRKY domain | 435 | 501 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | SMART | WRKY_cls | 222 | 280 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | SMART | WRKY_cls | 448 | 507 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 506 | 542 | - | - | |
Lsi06g00700 | 709 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 113 | 664 | IPR044810 | GO:0003700 | |
Lsi06g00700 | 709 | PANTHER | WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 | 113 | 664 | - | - | |
Lsi06g00700 | 709 | SMART | CaM_binding_2 | 10 | 122 | IPR012417 | GO:0005516 | |
Lsi06g00700 | 709 | Gene3D | WRKY domain | 218 | 282 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | SUPERFAMILY | WRKY DNA-binding domain | 441 | 508 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | SUPERFAMILY | WRKY DNA-binding domain | 220 | 281 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Lsi06g00700 | 709 | Pfam | WRKY DNA -binding domain | 223 | 278 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | Pfam | WRKY DNA -binding domain | 449 | 506 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 674 | 698 | - | - | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 375 | 427 | - | - | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 670 | 698 | - | - | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 407 | 423 | - | - | |
Lsi06g00700 | 709 | MobiDBLite | consensus disorder prediction | 508 | 542 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00157 | Lsi-Chr3:2176166 | Lsi06g00700 | Lsi-Chr6:11115700 | 4.11E-17 | dispersed | |
Lsi06g00700 | Lsi-Chr6:11115700 | Lsi07g01425 | Lsi-Chr7:20782000 | 1.85E-99 | dispersed | |
Lsi08g01127 | Lsi-Chr8:19899327 | Lsi06g00700 | Lsi-Chr6:11115700 | 2.15E-06 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25485 | PF07839 | CaM_binding | 4.20E-24 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00700 | K18835 | - | csv:101206605 | 897.116 |