Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00700 ATGGTTGAAAGGTCTGAGACCCGATCAGCTTCTTCATCACCATTGTCATCTAGGTCCCCATCTGAACCTGTCCATGTTGAGCATTGTGGCTCTACCTCAGGAAATGATGTGAAAAATGTGAGAATTCAAAGTGCTCAAAGTCCTATAGGTGATTCAAGAAAGAGAAACATCAAGGGTAAAGAGGCAACCAAAATGGTAATGAAAATCAAATCTGAGAGGGTTGTCCTTAGACATCAGGATTTGAAAGGAAAGAAAGAAATCCAAAGTTTGTTTAATAATGTCATTGAAGAGACCGCAAGCAAGCTTGCACAGACCAGGAAGAGTAAGGTCAAGGCTTTGGTTGGTGCCTTTGAAACTGAAGCTGGCATTGATCGTCAAGCCTTTGAATCAGAGAAAACGTTGATGGATTTTGAATTCCTGCCTGATTTTCCAAAAGAGGCTTCTGTATTGAAGTATGAAATTGCTCCATCCACTGATAATAGTTATTTTGATGGCAAGATTGCTAATGGCAACTGTGAGAATATAGAAAGTTGTCTTTCTTCTATAGCTACTAATCAACCATGTATACCTGAAGAATCAACAAAAGGAGATGACATTGAGACGCAGCATCCTTTAGAAGATGAACAGAAAGGGGCTTACATTCCTATGGGAATATTAAGGACATCAGAAGATGGATACAACTGGAGGAAATATGGACAGAAACAGGTCAAAGGTAGCGAATATCCAAGAAGCTACTATAAATGTACACATCCAAATTGTCTAGTAAAGAAAAAGGTGGAGCGATCTCTTGATGGTCATATAACAGAAATCATCTATAAGGGTGCTCATAATCATGCAAAACCTGATCCCAATCGTCGAGCCATGCTTGGATCCGTGCCAACTCCAGGTGATACTCCAGATATTGGTGAAGGTGGTGGAAACCGTTCCAAACTTGAAGCTGGGCTGACATGGAGAAACACTCAATATGGGGTGAAGGATATCAAACTTATCTCAGATTGTAGTATTGTTGATGGTCTGGAGAGGACATCCTCCGTATCAGCTGTGACTGAGCTTGCTGATCCATTGTTAAATCCCCAAGGGAAAACTGTTGGGGTTCTTGAATCAGTGGGAACACCAGAGCTTTCATCCACACTTGCTAGTCATGATGATGATGATGGTGGTGGCGGTGACGATGATGATCTTACAACTCAGGGAAGTATTTCAGTTTGCACAGAAGCTGATGATGCCGAACCTGAATTGAAAAGAAGGCGAAAAGAGGGCAGTTCAATTGAGACAAACTTGGCTTCAAGATCTGTTCGTGAACCGAGAGTAGTTGTCCAAATTGAAACTGAAATTGACATACTTGAAGATGGGTATCGGTGGCGGAAGTATGGGCAAAAAGTTGTCAAAGGAAATCCAAATCCAAGGAGCTACTACAAATGCACAAGTGCAGGCTGTGTAGTAAGGAAACATGTCGAGAGAGCATCACATGATCTGAAATGTGTTATTACAACATACGAAGGAAAACACAATCATGAAGTGCCTGCAGCAAGAAATAGCAGTCAAGTAAACTCGAGTAATGGCAATGCCCAACCGTCTGCTTCTCATGTGCAACCAAACATGGGTTTGTCCAGAAACTCGAACGTCCCAAAGTCCGAAACACAAATTCAAGATCTTGCCGCTCAGTTTTATCCAAAACCGGAATTTAACCACGACTATCAGAGGTCTGGTTGTTTTGACACTTTTACGAACGATATGAAACTTGGAGCTCCTTCATTCTGTCAAATGAAGTTCCCTCCACTCCGAAACACCTTGCCTTATAGTTCCTTTGGATTAAATTCAAAGCATCCTTCAACGAGTATCTCTGGTTCTTTGGCATCTGTGGTCCCGGACTTTCCAATTTCCTTGCCATTGAACCAAAACCTTTCAGCTTCTGGTTACGATTTTACCAATGGAAGACCAATACCACCATTTCAGGTTTTCCTAGCTGGTCAGCAGCTGAGGGAGACAGATAGATTCCTCACACCCAAACAGGAGCACGACGACAATAACATCGGTGCTTCGTTCCAACCAGTTGTTGATAGTTCGAGTGGATCTTCATCGTCATCGGTTTCATCAGTTTATCAACAAATGATGGGAAATTTTCCATAG 2130 42.02 MVERSETRSASSSPLSSRSPSEPVHVEHCGSTSGNDVKNVRIQSAQSPIGDSRKRNIKGKEATKMVMKIKSERVVLRHQDLKGKKEIQSLFNNVIEETASKLAQTRKSKVKALVGAFETEAGIDRQAFESEKTLMDFEFLPDFPKEASVLKYEIAPSTDNSYFDGKIANGNCENIESCLSSIATNQPCIPEESTKGDDIETQHPLEDEQKGAYIPMGILRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCLVKKKVERSLDGHITEIIYKGAHNHAKPDPNRRAMLGSVPTPGDTPDIGEGGGNRSKLEAGLTWRNTQYGVKDIKLISDCSIVDGLERTSSVSAVTELADPLLNPQGKTVGVLESVGTPELSSTLASHDDDDGGGGDDDDLTTQGSISVCTEADDAEPELKRRRKEGSSIETNLASRSVREPRVVVQIETEIDILEDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCVVRKHVERASHDLKCVITTYEGKHNHEVPAARNSSQVNSSNGNAQPSASHVQPNMGLSRNSNVPKSETQIQDLAAQFYPKPEFNHDYQRSGCFDTFTNDMKLGAPSFCQMKFPPLRNTLPYSSFGLNSKHPSTSISGSLASVVPDFPISLPLNQNLSASGYDFTNGRPIPPFQVFLAGQQLRETDRFLTPKQEHDDNNIGASFQPVVDSSSGSSSSSVSSVYQQMMGNFP 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11115700 11120378 + Lsi06G007000.1 Lsi06g00700 665430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00700 709 ProSiteProfiles WRKY domain profile. 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 ProSiteProfiles WRKY domain profile. 443 508 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 Pfam Plant calmodulin-binding domain 49 119 IPR012417 GO:0005516
Lsi06g00700 709 Gene3D WRKY domain 435 501 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 SMART WRKY_cls 222 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 SMART WRKY_cls 448 507 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 MobiDBLite consensus disorder prediction 506 542 - -
Lsi06g00700 709 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 113 664 IPR044810 GO:0003700
Lsi06g00700 709 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 113 664 - -
Lsi06g00700 709 SMART CaM_binding_2 10 122 IPR012417 GO:0005516
Lsi06g00700 709 Gene3D WRKY domain 218 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 SUPERFAMILY WRKY DNA-binding domain 441 508 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 SUPERFAMILY WRKY DNA-binding domain 220 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 MobiDBLite consensus disorder prediction 1 51 - -
Lsi06g00700 709 Pfam WRKY DNA -binding domain 223 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 Pfam WRKY DNA -binding domain 449 506 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g00700 709 MobiDBLite consensus disorder prediction 674 698 - -
Lsi06g00700 709 MobiDBLite consensus disorder prediction 1 58 - -
Lsi06g00700 709 MobiDBLite consensus disorder prediction 375 427 - -
Lsi06g00700 709 MobiDBLite consensus disorder prediction 670 698 - -
Lsi06g00700 709 MobiDBLite consensus disorder prediction 407 423 - -
Lsi06g00700 709 MobiDBLite consensus disorder prediction 508 542 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00157 Lsi-Chr3:2176166 Lsi06g00700 Lsi-Chr6:11115700 4.11E-17 dispersed
Lsi06g00700 Lsi-Chr6:11115700 Lsi07g01425 Lsi-Chr7:20782000 1.85E-99 dispersed
Lsi08g01127 Lsi-Chr8:19899327 Lsi06g00700 Lsi-Chr6:11115700 2.15E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25485 PF07839 CaM_binding 4.20E-24 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00700 K18835 - csv:101206605 897.116