Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00702 ATGGAAGTCCTAAACCTTCGTGATTTCGCTATATATACATTAGATTTTGGATTCATCGCTAAGTTTTCGCAGATTTCCCTCTTCTCTTCCCCGATTGTTTGCAAATTTTTCTGCTCTCTTCAATCCTTCACCAAAATGAGGCTCGAAGTCGCCGACGACGATCTCGACGCCCTTCTTCTTCCTCCTCCTAACTTCTCTATGGTCGAGGACGGCATTTTCCGATCCGGCTTCCCTCAGCCCCCCAATTTCCCCTTCCTCCAAAGCCTCAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAAGGCTAATAATATCAAGCTTTTTCAATTCAAAATTGAAGGCAAAAAGGAGCCTTTCGTTTCGATTCCGAAGGATGCTATTCTTGAGGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGCTCGCTTGTTGGTTGCCTGAGGAAGTTTCAGAACTGGTGTTTGACTTCGGTGTTCGAGGAGTACCAGCGATTTGCAGGCATGAAATCGAGGGTGACAGATCTACAATTCATCGAGACATTCGACATTGCATCTCTGAGGCAATGTGTTTACAGCATCATATATCAGTACCAAGGTTATAGCTCAAACAAGAGGAGGCTGTTGTATAGAGAAGAAAACTTGCAAAAGCCTCAAACAACATCAGTTTAG 738 44.04 MEVLNLRDFAIYTLDFGFIAKFSQISLFSSPIVCKFFCSLQSFTKMRLEVADDDLDALLLPPPNFSMVEDGIFRSGFPQPPNFPFLQSLNLRSIIYLCPEPYPEENLEFLKANNIKLFQFKIEGKKEPFVSIPKDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRFAGMKSRVTDLQFIETFDIASLRQCVYSIIYQYQGYSSNKRRLLYREENLQKPQTTSV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11192637 11195196 - Lsi06G007020.1 Lsi06g00702 665432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00702 245 PANTHER TYROSINE-PROTEIN PHOSPHATASE 55 227 - -
Lsi06g00702 245 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 60 205 IPR029021 -
Lsi06g00702 245 ProSiteProfiles Dual specificity protein phosphatase domain profile. 64 215 IPR020422 GO:0006470|GO:0008138
Lsi06g00702 245 Pfam Tyrosine phosphatase family 59 208 IPR004861 -
Lsi06g00702 245 Gene3D Protein tyrosine phosphatase superfamily 58 208 IPR029021 -
Lsi06g00702 245 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 55 227 - -
Lsi06g00702 245 ProSitePatterns Tyrosine specific protein phosphatases active site. 154 164 IPR016130 GO:0016311|GO:0016791
Lsi06g00702 245 CDD PFA-DSP_Siw14 64 205 - -
Lsi06g00702 245 PRINTS Plant and fungal dual specificity phosphatase signature 132 146 IPR020428 GO:0016791
Lsi06g00702 245 PRINTS Plant and fungal dual specificity phosphatase signature 115 129 IPR020428 GO:0016791
Lsi06g00702 245 PRINTS Plant and fungal dual specificity phosphatase signature 96 109 IPR020428 GO:0016791
Lsi06g00702 245 PRINTS Plant and fungal dual specificity phosphatase signature 59 76 IPR020428 GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00702 Lsi-Chr6:11192637 Lsi11g01669 Lsi-Chr11:24952220 4.80E-52 dispersed
Lsi06g00702 Lsi-Chr6:11192637 Lsi10g01569 Lsi-Chr10:20151968 1.19E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00702 K18045 - csv:101211082 369.392