Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00705 ATGAGACGTAAAATGGAGAGATTGGTTCTTCTTCCCTTCTCAGTGGGATGTATCTCTGAATCAAGTGTTGCTGTGGGAATTCAACACAAATCAACAACTTCCAAACCACACTCCATCTCTTCTCCAACATCAAAAGGTGAGAAAGATGAAGATGGGAAAGATGAAGTTGGAGGTGAAAACCTATTAGAGGAAAGCTTGAAGAACTCTCAGAGGTTCACAGCACTTGCAAAGCCTAATATTGGAGTTGGCTTTCATAGGCTTTACAAAGGTTTCAAGAACATCTCTCAATTATTTGTGTACAAAGAAGAGATGGAAGAAATGGAAATGGATATGGAAATAGGAACTCCCACGGATGTGAAGCATGTGACACACATAGGATGTGATGCCACCACAAGAGATGATGCCAACTCTTTCATTGCTTGGGAAACTCTTTTAGCTTCTTCTTCTTGGAGGCAATTTGATGAACAACTTTCAAACCCTAAACATTTACCTAATATTTTAGGTCATTCCATTTGA 516 39.34 MRRKMERLVLLPFSVGCISESSVAVGIQHKSTTSKPHSISSPTSKGEKDEDGKDEVGGENLLEESLKNSQRFTALAKPNIGVGFHRLYKGFKNISQLFVYKEEMEEMEMDMEIGTPTDVKHVTHIGCDATTRDDANSFIAWETLLASSSWRQFDEQLSNPKHLPNILGHSI 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11302593 11305428 - Lsi06G007050.1 Lsi06g00705 665435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00705 171 Pfam P21-Rho-binding domain 112 151 IPR000095 -
Lsi06g00705 171 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 1 165 IPR044509 -
Lsi06g00705 171 MobiDBLite consensus disorder prediction 28 56 - -
Lsi06g00705 171 Gene3D CRIB domain 109 169 IPR036936 -
Lsi06g00705 171 ProSiteProfiles CRIB domain profile. 113 126 IPR000095 -
Lsi06g00705 171 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4 1 165 - -
Lsi06g00705 171 MobiDBLite consensus disorder prediction 42 56 - -
Lsi06g00705 171 CDD CRIB 113 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00705 - - - cmo:103487233 313.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00705 Lsi-Chr6:11302593 Lsi05g01745 Lsi-Chr5:24845470 1.94E-08 dispersed
Lsi06g00705 Lsi-Chr6:11302593 Lsi02g00626 Lsi-Chr2:5575667 6.99E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01032 Cam03g1080 Cec03g1084 Cco03g1075 Clacu03g1054 Cmu03g1642 Cre03g1342 Lsi06g00705 . . Cme02g00916
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012923 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00705 Lsi_Chr06 FPKM 6.357263 7.335311 0.341817 0.274205 1.126941 1.537991 1.913323 0.144405 0.167916 0.126688