Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00706 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCCCTCACACCATCCTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCTGTGCGACCTGGGGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGTAATAAGAAGAAATGTGATCCTTTCAGTTTTTTATTTTATTGGTTTTTTTCAAGGTAGAGCTATTGCCACTGCAAGAATGAAAGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGTCAGGCACGTGTTTATTTCATTATCTTTACTTATGTCGTTTGTTTGAATTTGTCATATGATAGGTTTCTGTATTTTTTTTCCCAAGTTTTAGGAACTTCTTCTGCAGCCTTTACATACTACCTGAAGACAGGAACTTGCAAGTTCGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTCGCCTTAAATATTTTAGGCTATCCACTACGCCCGATGAGAAGCACTTGTGTTGATGAAAAAGACTCTTTCGTGATCATTGATAATCCTTTTAATTACAAAGGAATACCTTATCTTATCAATTTACCTACGCTTTTTTGCTATAAATACTTATTTACCCATTCTCTCCCCACACTCCCAATTGTGCAGAGTGAGACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTATCCAACCGTACAATCGCCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCAAGGCCTTCATTTATTCCCAGTCCAAGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAGTGCATTTAATGTAAGTGTGAGTGTTGTGATAGTTGTGTTGGAAGTAAACATCTTCTGTGTTAAAGTTCCATTATTTCATGGGCAACTTGTGAGACGTATCGTTCTCTTAATTTTTCAAAATGTTATGTTTGTAGTTACTTCTATGAAATTACATTTCTATGCTCTAGTGCGATGCGTGTTCAGCAGTTTTGTAGGGAGTTGTAGCGACCTCTTTCACAGACTCTTCTTAGCTTTGAGGTTTCACTTGTGGGATAATTTTGCTGGGTGTCTTCTCTTGTTGATCAAGAAAGCTAAAAGCTTTTGCCTCATTGGAGTTCGGGGATTAAGGGTTGGAGTCCTTGAATTTTCAGCTTTCATTGTGTGCTGCCGCTTTTGCATTTTGAAGGGCGGGGCCATTCTCCCTCATGTAGAGGTTTTATTAAAATGTCATTTTCTGATTAATTATTCATATATATTGGTTGCTGTAGAAGATCAGCTAGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTTCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCACCCTATGGGGATCTTCACATACAATCTTTCTGCAGCATCATCAGCCAATGCCCCGGTTCAGCATTTGTTTGGGACGTCTTCAGGAACAACTGCACTGAACCTATCATCTGAGGGGCTAGTCGAAGCAGGATCTGCAAAGCCGAGGCGGCTATCAATCTCTGAGACTCGAGAGATGCCATCTGACGATGAAAATATCAACGCCGAGGGCTGA 1998 41.94 MEYDSGIPMSVTEGHSSALTPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELVIRRNVILSVFYFIGFFQGRAIATARMKGEFPERIGQPECQARVYFIIFTYVVCLNLSYDRFLYFFSQVLGTSSAAFTYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPMRSTCVDEKDSFVIIDNPFNYKGIPYLINLPTLFCYKYLFTHSLPTLPIVQSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRPSFIPSPRWQGPSSYASLILPQGVLSVPGWSAFNVSVSVVIVVLEVNIFCVKVPLFHGQLVRRIVLLIFQNVMFVVTSMKLHFYALVRCVFSSFVGSCSDLFHRLFLALRFHLWDNFAGCLLLLIKKAKSFCLIGVRGLRVGVLEFSAFIVCCRFCILKGGAILPHVEVLLKCHFLINYSYILVAVEDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSAKPRRLSISETREMPSDDENINAEG 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11422584 11435226 + Lsi06G007060.1 Lsi06g00706 665436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00706 665 SUPERFAMILY CCCH zinc finger 574 598 IPR036855 GO:0046872
Lsi06g00706 665 ProSiteProfiles Zinc finger C3H1-type profile. 525 553 IPR000571 GO:0046872
Lsi06g00706 665 MobiDBLite consensus disorder prediction 639 665 - -
Lsi06g00706 665 ProSiteProfiles Zinc finger C3H1-type profile. 253 280 IPR000571 GO:0046872
Lsi06g00706 665 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Lsi06g00706 665 SUPERFAMILY CCCH zinc finger 253 280 IPR036855 GO:0046872
Lsi06g00706 665 Gene3D - 156 289 - -
Lsi06g00706 665 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 516 664 - -
Lsi06g00706 665 PANTHER PROTEIN PHOSPHATASE RELATED 516 664 - -
Lsi06g00706 665 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872
Lsi06g00706 665 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 27 207 - -
Lsi06g00706 665 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 573 598 IPR000571 GO:0046872
Lsi06g00706 665 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Lsi06g00706 665 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 163 182 IPR000571 GO:0046872
Lsi06g00706 665 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 279 IPR000571 GO:0046872
Lsi06g00706 665 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 527 552 IPR000571 GO:0046872
Lsi06g00706 665 Gene3D - 51 126 - -
Lsi06g00706 665 ProSiteProfiles Zinc finger C3H1-type profile. 571 599 IPR000571 GO:0046872
Lsi06g00706 665 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 249 353 - -
Lsi06g00706 665 PANTHER PROTEIN PHOSPHATASE RELATED 249 353 - -
Lsi06g00706 665 SUPERFAMILY CCCH zinc finger 529 554 IPR036855 GO:0046872
Lsi06g00706 665 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Lsi06g00706 665 PANTHER PROTEIN PHOSPHATASE RELATED 27 207 - -
Lsi06g00706 665 Gene3D - 523 600 - -
Lsi06g00706 665 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Lsi06g00706 665 SMART c3hfinal6 571 598 IPR000571 GO:0046872
Lsi06g00706 665 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Lsi06g00706 665 SMART c3hfinal6 253 279 IPR000571 GO:0046872
Lsi06g00706 665 SMART c3hfinal6 525 552 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00706 - - - csv:101221929 333.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00465 Lsi-Chr2:3897490 Lsi06g00706 Lsi-Chr6:11422584 1.99E-07 dispersed
Lsi06g00706 Lsi-Chr6:11422584 Lsi10g01567 Lsi-Chr10:20091428 1.03E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0933 Cone1ag1687 Cone10ag0605 Cone3ag0631 . . . . . . . . . . . . . . . . . . . . . Bhi10g02240 . . . . . . Cla03g01037 Cam03g1082 Cec03g1087 Cco03g1076 Clacu03g1056 Cmu03g1643 Cre03g1343 Lsi06g00706 . . Cme02g00920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003355 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 4 5 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25486 PF00642 zf-CCCH 5.00E-10 CL0537 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00706 Lsi_Chr06 FPKM 21.08218 22.924482 24.318514 28.44672 9.732486 9.417247 10.351411 33.303318 33.113895 33.213547