Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00707 ATGATGTCTAGCTATGGCGCTGGATTCTCCCTCGTTTTTCTTCTTTTTCTCGCTGCTTTGGCTACTGGGAATGAACTAAGTTTCACTCAATCAAATGGGTCTGTAGCAGAGATGGTGCCACTGATTGAGGAAGGGAAAATGAAGATGATGGAGATGAATGAGACTAGAAGGAGATTGGGGAGCTTCCAAATATGTGCTCCTTGCACTTGCTGTGGTGGAGCTAAGGGCCTGTGTTTGCCTTCTCCTTGTTGCTATGCCATCAATTGCAACATCCCCAATAGGCCATTTGGTTTTTGCTCATTCACTCCCAAATCCTGTAATTGCTTTGGATGCAATCTCTAG 342 45.03 MMSSYGAGFSLVFLLFLAALATGNELSFTQSNGSVAEMVPLIEEGKMKMMEMNETRRRLGSFQICAPCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFTPKSCNCFGCNL 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11440208 11441154 + Lsi06G007070.1 Lsi06g00707 665437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00707 113 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 112 - -
Lsi06g00707 113 PANTHER - 5 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00707 - - - csv:101221700 217.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00707 Lsi-Chr6:11440208 Lsi11g00864 Lsi-Chr11:11122001 2.28E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00710 . . . . . . . . . Cla03g01038 Cam03g1083 Cec03g1088 Cco03g1077 Clacu03g1057 Cmu03g1644 Cre03g1344 Lsi06g00707 . . Cme02g00923
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002021 2 1 2 4 3 2 3 2 2 1 1 2 4 2 2 4 2 2 3 2 2 2 1 2 2 2 2 3 2 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00707 Lsi_Chr06 FPKM 22.657614 23.477398 38.802639 38.212242 17.676266 16.747356 15.820928 69.977325 68.518105 73.32843
Lsi06g00707 Lsi_Chr00 FPKM 2.824432 4.476629 2.39881 2.833405 23.027891 29.231745 27.211773 8.331571 7.347812 7.001042