Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00723 ATGGTTTCTGTATCGGGTTCGGTGTTCTTCCCATTAACTGTACCCAATTGTTCCTCTCGATCGCGTAAAGTATCTGTTCTTGATGCGCACAATTCTTTTTATTGTAAGAAAAAGGACCAGAGAAGGATTGTTTGCAATTGCATTGCGCCTCCGCCGTACTTCAAGAGTGATGGATCATCTGCCGTAAATTCCAATGACTCGTTTGGATCAGAACATTTAATCCCAGATAATGAGGACAAGGATGAGTCTGATGTTCTCATTGAGTGTAGAAATGTCTACAAATCCTTTGGAGACAAACATATACTGAGAGGTGTGAGCTTCAAGATTAGACATGGAGAAGCTGTGGGAGTAATTGGGCCTTCTGGTACTGGGAAGTCTACAATACTGAAGATCATTGCAGGTCTTCTTTCTCCAGACAAGGGAGAGGTATATATTCGAGGTAGAAAGCGAGTTGGTTTGATCGATGATGAGGAGCTATCTGGTCTTCGAATTGGATTGGTTGCTCATTTTGAACCAGTTCATGAGGAACAATTAATCGATGAAAACAAAGATGGAGGTGTTGAAGAAGATGAAGCCACTGTAGAGAATGTGTCCATTCGGTTAGATCAATTAACTGAGGCACACAACCAACCACAACCACCTCCATCGCAAGAGAATAGAGCATAA 666 42.04 MVSVSGSVFFPLTVPNCSSRSRKVSVLDAHNSFYCKKKDQRRIVCNCIAPPPYFKSDGSSAVNSNDSFGSEHLIPDNEDKDESDVLIECRNVYKSFGDKHILRGVSFKIRHGEAVGVIGPSGTGKSTILKIIAGLLSPDKGEVYIRGRKRVGLIDDEELSGLRIGLVAHFEPVHEEQLIDENKDGGVEEDEATVENVSIRLDQLTEAHNQPQPPPSQENRA 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12173347 12180657 + Lsi06G007230.1 Lsi06g00723 665453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00723 221 MobiDBLite consensus disorder prediction 198 221 - -
Lsi06g00723 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 156 IPR027417 -
Lsi06g00723 221 Gene3D - 60 216 IPR027417 -
Lsi06g00723 221 Pfam ABC transporter 102 204 IPR003439 GO:0005524
Lsi06g00723 221 MobiDBLite consensus disorder prediction 181 221 - -
Lsi06g00723 221 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 2 167 - -
Lsi06g00723 221 Coils Coil 187 207 - -
Lsi06g00723 221 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 2 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00723 - - - csv:101220756 306.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00723 Lsi-Chr6:12173347 Lsi11g00863 Lsi-Chr11:11101854 2.82E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01043 Cam03g1088 Cec03g1096 Cco03g1087 Clacu03g1066 Cmu03g1649 Cre03g1353 Lsi06g00723 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006421 1 0 0 1 1 1 2 2 1 1 1 1 2 0 1 2 1 2 1 2 1 1 1 2 2 2 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00723 Lsi_Chr06 FPKM 2.613269 3.181306 0.490285 0.390583 1.306395 1.501162 1.175148 1.063865 1.297828 1.45544