Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00730 | ATGGAACATGTTGAGGAAGAAAGCATTTTGGAAGCAAATATGATTTCCAATTCAACTCATGACTACCCATTTACCACTATTTTGGTTCCCTTGGGCCTAAATCAGACTTGCAAAATTGACGCTTTCTCATATGGCTGTCGTAAGCCTCGTAACTTGGAGATGCAGAGAAGGAGACGCAAACTTTATAAGGAGAAGTTTTTTAGGCAAAACGGTGGTCTCTTATTGCAGCAAAAGCTATTTGAAGATAACGATCGAGTAAAAGTATTTTCACAGGAAGAACTTGAACAAGCAACTGATAATTACAACGAAACTAGAATTCTTGGTCAAGGAGGGTACAGTACAGTTTATAAAGGGATACTCCAAGATAATACTGTTGTTGCAGTCAAACGCTCAAAGCAAATTGAAGCAACTTGGATTGAACAATTCATTAATGAAGTCATCATTCTCTCTCCAATTAATCACAAAAATATTGTCAAGCTTCTGGGTTGTTGTTTAGAAACTGAGTTTCCTTTGTTAGTTTATGAATTTGTTTCGAACGGGACGCTTTCGCACCATATTCACAAGAAAGATCTTGGAGATCAATCACTGTCTCTTCCATGGGAAATTCGTCTTAGAATTGCATCTGAAATTGATGGAGCTATCTCTTACATGCATTCTATAGCTTCAACTCCCATTTTTCATAGAGATATCAAGTCTCCAAACATTCTTTTAGATGATAAATATCGTGCAAAAGTTTCCGACTTTGGAACGTCAAGATTTGTCTCGTGCGATCAATCTCATTTAACTACTAAAGTACAAGGAACTATTGGATATATTGATCTCGAGTACATCAGATCAAGTCAATATACCGAAAAGAGTGACGTTTATAGCTTTGGAGTGTTATTGGTAGAGCTTTTAACAACGAAGTTGCCTACCACTTTTGCAAGAAATGAGGATAGAAATCTATTGGATTACTTCGTTTCATTAGAAAATGAGAACGAGCTTGTTGAAATTCTAGATATTGAAGCAGCCAAAGAAGAAATATGGAGGTTGTTAACTTTGTGGCAAAGCTCACCACCAAATCCATATCTCATTCGAAACAACACAGAAGGTTGCTCTATCAATGATAACACATCTCCGCCAACAGGATACATTTGTACTGATTCTTTCGACTCATGTGTTTCCTATTTGATTGTAAAATCCAATTCAAACAATCCTGAATTGGGTTTCAACAACACATCATTAGGAAACAAAAATTTCTTGAGGAAAAGAGTTTCTTGTAATTGTGAGGGAGCTTTCTATCAGTATACCACAGAATACAACGTTAAAAGTGGTGATAGTTATGAAAAAATAGCGAATGATATTTTTCATGGCTTCACCAGCTGCTCACTGCTGAGAAGACGAAGAATTTTAGTTCCATTGCGATGTGTTTGTCCTTCAAAACATGAGAAATCTAATGGGATTAAGTCTTTGGCTGTGTACATGTTACAATCAAATGAGAGCATTGGATCCATTGCAAAGGATTTTGGGGTTGAGGAAGAAACCATTTTGAAAGCCAATTCGCTTTCAAATTCAAGTCTTGTCTTTCCGTTTACGACGGTTTTGGTTCCGTTGTCGGAGAATTTGAGCTGTATAATAGATGAATCTACATGGAATTGCGGTACCAACACCAACAATAACTACAGGAGAGTTGTTTTGAATGGTGAAACTTCGTTTATTCCCTTCATCATCATCTTGAGTTCAATAGGATACGAGATTAAACTGTTGAGTTTTGAAATCGTAATTGATAGCTTTGGATTGATTAGTCAAAGTGTTGTATCAGTATTACTTTGTTGTGTTTGTTGCGGATGCTTAGGACATCGACTACTAAATAAAAAAAGAAGACGCAGACTTCATCAAAAAAAGTTCTTCAAGCAAAATGGTGGCCATTTATTACAACAAAAGCTTCTTGAAGATAATGAGAGAGTCAAAATATTTACACAGGAAGAACTTGAACAAGCAACTGATAACTACAATGAAACTACATTTCTTGGTCAAGGAGGATATGGTACAGTTTACAAAGGGGTACTCCAAGACAACACTAGTGTTGCAATCAAAAGGTCAAAGCAAATTCAAGCAAATTTTATTGAACAATTCATTAATGAAGTCATTATTCTCTCTCGAATCAACCACAAAAATATCGTCAAGCTTCTCGGTTGTTGTTTAGAAACTGAGTTTCCTTTGTTAGTCTATGAATTTGTTTCGAATGGGACGCTTTCACACCATATTCACAAGAAAGATCATGAAGAATCGTCTACTATTTCATGGGAAACTCGTCTTAGAATTGCTTCTGAAGTTGCTGGAGCTATCTCTTACATGCATTCTACAGCTTCGACGCCGATTTTTCACAGAGATATCAAGTCTTTGAACGTTCTCTTGGAGGACAATTATAGTGCCAAACTTTCTGATTTTGGGACATCAAGATTTTTCTCATATGATCAAACTCATTTGACTACTGAAGTGCAGGGAACTTTTGGATATATTGACCCTGAGTACTTTAGATCAAGTCAATACACGGAAAAGAGTGACGTTTATAGCTTTGGAGTGTTAATGGTAGAGCTTTTAACTGGGAAGAAGCCTGTCACGTTTGCAAAAGATGAGGGGGAAAATTTATTAGATTACTTCATTTCATTGGAAAAGGCTAATGAGCTTGTTGAAATTCTAGATGCTGAAGTAGCCAAAGAAGAAACTATGGAGGGTGTTAACTTTGTTGCAAAACTCACCACCAAATGTTTAAGAGCACATGGGAAAGAAAGACCCACCATGAAAGAAGTATATTTGGAGCTTGAAGGATTGAAGAAATCATCCCAAGATTGCTTACCAATTACTGAAGAAAAGTTGAATGATCTTCAACCATATGTTATTAGAAACAACACAGAAGGTTGCTCAATTAATGACACTTCTCCCCCAAAAGGATATATTTGTACTGATTCCACCGATTCATGTGTTTCCTATTTGTTTTTAAGAGCATCAAATTCTCAAAATTCTGGCTTCTATTTCGAAGACATATCATTAGGAAAAACCAATTTCTGGGCAAACCGAGTTGATTGTAAATGTATGGGTCCTTTCTATCAATCTACTTTCCAATACAATATTCAAAGTGGTGATAGTTATGAAAAAATAGCAAATGATATTTTTCATGGCTTCACGAGCTGCTCGGTTCTAAGAAGTTTGAACCTTAATTTTACTGTTGATGCAAGTTCTTCCATAGGAAAAAGTTTAGAAATATCGTTGATATGTGCTTGTCCAAGCAAGGATGAAAAAGGCAATGGGATTGCGTCGTTGGTTGTGTATATGCCAAAGCCAAATGAGAGGATTGAATCCATTGCTAGTGTTTTTGGGGTTGAAGAAAAAGGCATTTTGGAAGCCAATATAATTTCTAGTTCAAATCAGCTGATATTCCCATTTACGCCTCTTTTGATTCCGTTGAGCCTAAGAAAGACTTGCACAATGTTACCAAACTCCTCCTTGATGTGTATTCGTTGGAGTGAGAAGCGGAAACTTATTAACAAACTCATGTGGGCTGCAATAGGTTGTGGAATAATATTGGTATGTAGTTTCTTTTTCGGATGCATTGGACATCAACAGCTAATTAGGAAAAGAAGACGTAAACTTTATAAGAAAAAGTTTTTCAAGCACAATGGTGGCATGTTATTGCAGCAAAAGCTAGTTGAAGATAATGAGAGAGTAAAAATATTCACACAGGAAGAACTTGAAGAAGCAACCAATAAGTATAGTGAAAGTAGAATTCTTGGTGAAGGAGGGTATGGTACAGTTTATAAAGGGATACTCCATGATAACACTCTTGTTGCAATCAAAAGGTCAAAGCAAATCGAAGCAAATTGGATCGAACAGTTCATCAATGAAGTTATTGTTCTCTCTCGAATCAACCACAAAAATATTGTCAAGCTTCTGGGTTGTTGTTTGGAGACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCAAATGGAACACTTTCATACCATATTCACAATAAATTAGACCACGGAGAATCGTCTTCTCTTTCATGGGAAACTCGTCTCAAAATTGCTTCTGAAGTTGCTAGTGCTATATCTTACATGCATTCTATAGTTTCAACTCCCATTTTTCATAGAGATATAAAGTCATTGAACATACTTTTGGATGATAATAATAGTGCAAAGGTTTCTGATTTTGGAATATCAAGATTTGTGTCATGTGATCAATCCCATTTGACTACAAAAGTGTTGGGAACAGTTGGATATATAGATCCTGAGTACTTCAAATCAAGTCAATACACTGGAAAGAGTGATGTTTATAGCTTTGGAGTCTTGATGATAGAACTTCTAACTAGGAAGCTACCAACTTTTGCCAAAAATGATGGTGGGAACCTATTAGACTACTTCATTTCATTGGAAAGGACTAATCAACTTGTTGAAATTCTAGATGCTACATTGGTGAAGGAAGAGAGGATGGATGTTGTTAACAATGTGGCAGCACTAGCCATAAAATGTTTAAGATCAAATGGGAAAGAAAGGCCTACAATGAAGCAAGTATATTTGGAACTAGAAGGATTGAGAAAGTCTCAAGATTGTTTAGAAATTATTGAAGAAACTCATTCAACTACTTTTTCATTGAACTCATTTGAGATTAGTGATGACGAGCTTGTAAGATGA | 4674 | 35.96 | MEHVEEESILEANMISNSTHDYPFTTILVPLGLNQTCKIDAFSYGCRKPRNLEMQRRRRKLYKEKFFRQNGGLLLQQKLFEDNDRVKVFSQEELEQATDNYNETRILGQGGYSTVYKGILQDNTVVAVKRSKQIEATWIEQFINEVIILSPINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKKDLGDQSLSLPWEIRLRIASEIDGAISYMHSIASTPIFHRDIKSPNILLDDKYRAKVSDFGTSRFVSCDQSHLTTKVQGTIGYIDLEYIRSSQYTEKSDVYSFGVLLVELLTTKLPTTFARNEDRNLLDYFVSLENENELVEILDIEAAKEEIWRLLTLWQSSPPNPYLIRNNTEGCSINDNTSPPTGYICTDSFDSCVSYLIVKSNSNNPELGFNNTSLGNKNFLRKRVSCNCEGAFYQYTTEYNVKSGDSYEKIANDIFHGFTSCSLLRRRRILVPLRCVCPSKHEKSNGIKSLAVYMLQSNESIGSIAKDFGVEEETILKANSLSNSSLVFPFTTVLVPLSENLSCIIDESTWNCGTNTNNNYRRVVLNGETSFIPFIIILSSIGYEIKLLSFEIVIDSFGLISQSVVSVLLCCVCCGCLGHRLLNKKRRRRLHQKKFFKQNGGHLLQQKLLEDNERVKIFTQEELEQATDNYNETTFLGQGGYGTVYKGVLQDNTSVAIKRSKQIQANFIEQFINEVIILSRINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKKDHEESSTISWETRLRIASEVAGAISYMHSTASTPIFHRDIKSLNVLLEDNYSAKLSDFGTSRFFSYDQTHLTTEVQGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKKPVTFAKDEGENLLDYFISLEKANELVEILDAEVAKEETMEGVNFVAKLTTKCLRAHGKERPTMKEVYLELEGLKKSSQDCLPITEEKLNDLQPYVIRNNTEGCSINDTSPPKGYICTDSTDSCVSYLFLRASNSQNSGFYFEDISLGKTNFWANRVDCKCMGPFYQSTFQYNIQSGDSYEKIANDIFHGFTSCSVLRSLNLNFTVDASSSIGKSLEISLICACPSKDEKGNGIASLVVYMPKPNERIESIASVFGVEEKGILEANIISSSNQLIFPFTPLLIPLSLRKTCTMLPNSSLMCIRWSEKRKLINKLMWAAIGCGIILVCSFFFGCIGHQQLIRKRRRKLYKKKFFKHNGGMLLQQKLVEDNERVKIFTQEELEEATNKYSESRILGEGGYGTVYKGILHDNTLVAIKRSKQIEANWIEQFINEVIVLSRINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSYHIHNKLDHGESSSLSWETRLKIASEVASAISYMHSIVSTPIFHRDIKSLNILLDDNNSAKVSDFGISRFVSCDQSHLTTKVLGTVGYIDPEYFKSSQYTGKSDVYSFGVLMIELLTRKLPTFAKNDGGNLLDYFISLERTNQLVEILDATLVKEERMDVVNNVAALAIKCLRSNGKERPTMKQVYLELEGLRKSQDCLEIIEETHSTTFSLNSFEISDDELVR | 1557 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12475073 | 12504393 | - | Lsi06G007300.1 | Lsi06g00730 | 665460 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00730 | 1557 | ProSiteProfiles | Protein kinase domain profile. | 664 | 938 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | CDD | STKc_IRAK | 670 | 938 | - | - | |
Lsi06g00730 | 1557 | Gene3D | Phosphorylase Kinase; domain 1 | 1225 | 1326 | - | - | |
Lsi06g00730 | 1557 | Gene3D | Phosphorylase Kinase; domain 1 | 638 | 739 | - | - | |
Lsi06g00730 | 1557 | ProSiteProfiles | Protein kinase domain profile. | 101 | 357 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | SMART | serkin_6 | 1251 | 1505 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | SMART | serkin_6 | 101 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | SMART | serkin_6 | 664 | 938 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | SUPERFAMILY | Protein kinase-like (PK-like) | 650 | 948 | IPR011009 | - | |
Lsi06g00730 | 1557 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1257 | 1279 | IPR017441 | GO:0005524 | |
Lsi06g00730 | 1557 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1327 | 1545 | - | - | |
Lsi06g00730 | 1557 | Gene3D | Transferase(Phosphotransferase) domain 1 | 177 | 354 | - | - | |
Lsi06g00730 | 1557 | Gene3D | Transferase(Phosphotransferase) domain 1 | 740 | 957 | - | - | |
Lsi06g00730 | 1557 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g00730 | 1557 | ProSiteProfiles | LysM domain profile. | 485 | 529 | IPR018392 | - | |
Lsi06g00730 | 1557 | CDD | STKc_IRAK | 1257 | 1525 | - | - | |
Lsi06g00730 | 1557 | Gene3D | LysM domain | 473 | 536 | IPR036779 | - | |
Lsi06g00730 | 1557 | ProSitePatterns | Protein kinases ATP-binding region signature. | 670 | 692 | IPR017441 | GO:0005524 | |
Lsi06g00730 | 1557 | PANTHER | LYSM TYPE RECEPTOR KINASE | 971 | 1541 | - | - | |
Lsi06g00730 | 1557 | PANTHER | LYSM TYPE RECEPTOR KINASE | 54 | 339 | - | - | |
Lsi06g00730 | 1557 | Coils | Coil | 643 | 663 | - | - | |
Lsi06g00730 | 1557 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1375 | 1387 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g00730 | 1557 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 366 | 952 | IPR045274 | GO:0007166 | |
Lsi06g00730 | 1557 | Pfam | Protein kinase domain | 1251 | 1518 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | Pfam | Protein kinase domain | 101 | 312 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | Pfam | Protein kinase domain | 664 | 931 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | ProSiteProfiles | LysM domain profile. | 1034 | 1082 | IPR018392 | - | |
Lsi06g00730 | 1557 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 971 | 1541 | IPR045274 | GO:0007166 | |
Lsi06g00730 | 1557 | Coils | Coil | 1230 | 1250 | - | - | |
Lsi06g00730 | 1557 | Pfam | LysM domain | 1107 | 1148 | IPR018392 | - | |
Lsi06g00730 | 1557 | Pfam | LysM domain | 487 | 530 | IPR018392 | - | |
Lsi06g00730 | 1557 | ProSitePatterns | Protein kinases ATP-binding region signature. | 107 | 129 | IPR017441 | GO:0005524 | |
Lsi06g00730 | 1557 | PANTHER | LYSM TYPE RECEPTOR KINASE | 366 | 952 | - | - | |
Lsi06g00730 | 1557 | SUPERFAMILY | Protein kinase-like (PK-like) | 1235 | 1522 | IPR011009 | - | |
Lsi06g00730 | 1557 | Coils | Coil | 884 | 904 | - | - | |
Lsi06g00730 | 1557 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 54 | 339 | IPR045274 | GO:0007166 | |
Lsi06g00730 | 1557 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 318 | IPR011009 | - | |
Lsi06g00730 | 1557 | Gene3D | Phosphorylase Kinase; domain 1 | 81 | 176 | - | - | |
Lsi06g00730 | 1557 | ProSiteProfiles | Protein kinase domain profile. | 1251 | 1525 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00730 | 1557 | SMART | LysM_2 | 1103 | 1148 | IPR018392 | - | |
Lsi06g00730 | 1557 | SMART | LysM_2 | 486 | 530 | IPR018392 | - | |
Lsi06g00730 | 1557 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 787 | 799 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00730 | Lsi-Chr6:12475073 | Lsi06g00745 | Lsi-Chr6:13447858 | 9.43E-142 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83713 | PF00069 | Pkinase | 1.70E-51 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00730 | - | - | minc:123203463 | 839.336 |