Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00730 ATGGAACATGTTGAGGAAGAAAGCATTTTGGAAGCAAATATGATTTCCAATTCAACTCATGACTACCCATTTACCACTATTTTGGTTCCCTTGGGCCTAAATCAGACTTGCAAAATTGACGCTTTCTCATATGGCTGTCGTAAGCCTCGTAACTTGGAGATGCAGAGAAGGAGACGCAAACTTTATAAGGAGAAGTTTTTTAGGCAAAACGGTGGTCTCTTATTGCAGCAAAAGCTATTTGAAGATAACGATCGAGTAAAAGTATTTTCACAGGAAGAACTTGAACAAGCAACTGATAATTACAACGAAACTAGAATTCTTGGTCAAGGAGGGTACAGTACAGTTTATAAAGGGATACTCCAAGATAATACTGTTGTTGCAGTCAAACGCTCAAAGCAAATTGAAGCAACTTGGATTGAACAATTCATTAATGAAGTCATCATTCTCTCTCCAATTAATCACAAAAATATTGTCAAGCTTCTGGGTTGTTGTTTAGAAACTGAGTTTCCTTTGTTAGTTTATGAATTTGTTTCGAACGGGACGCTTTCGCACCATATTCACAAGAAAGATCTTGGAGATCAATCACTGTCTCTTCCATGGGAAATTCGTCTTAGAATTGCATCTGAAATTGATGGAGCTATCTCTTACATGCATTCTATAGCTTCAACTCCCATTTTTCATAGAGATATCAAGTCTCCAAACATTCTTTTAGATGATAAATATCGTGCAAAAGTTTCCGACTTTGGAACGTCAAGATTTGTCTCGTGCGATCAATCTCATTTAACTACTAAAGTACAAGGAACTATTGGATATATTGATCTCGAGTACATCAGATCAAGTCAATATACCGAAAAGAGTGACGTTTATAGCTTTGGAGTGTTATTGGTAGAGCTTTTAACAACGAAGTTGCCTACCACTTTTGCAAGAAATGAGGATAGAAATCTATTGGATTACTTCGTTTCATTAGAAAATGAGAACGAGCTTGTTGAAATTCTAGATATTGAAGCAGCCAAAGAAGAAATATGGAGGTTGTTAACTTTGTGGCAAAGCTCACCACCAAATCCATATCTCATTCGAAACAACACAGAAGGTTGCTCTATCAATGATAACACATCTCCGCCAACAGGATACATTTGTACTGATTCTTTCGACTCATGTGTTTCCTATTTGATTGTAAAATCCAATTCAAACAATCCTGAATTGGGTTTCAACAACACATCATTAGGAAACAAAAATTTCTTGAGGAAAAGAGTTTCTTGTAATTGTGAGGGAGCTTTCTATCAGTATACCACAGAATACAACGTTAAAAGTGGTGATAGTTATGAAAAAATAGCGAATGATATTTTTCATGGCTTCACCAGCTGCTCACTGCTGAGAAGACGAAGAATTTTAGTTCCATTGCGATGTGTTTGTCCTTCAAAACATGAGAAATCTAATGGGATTAAGTCTTTGGCTGTGTACATGTTACAATCAAATGAGAGCATTGGATCCATTGCAAAGGATTTTGGGGTTGAGGAAGAAACCATTTTGAAAGCCAATTCGCTTTCAAATTCAAGTCTTGTCTTTCCGTTTACGACGGTTTTGGTTCCGTTGTCGGAGAATTTGAGCTGTATAATAGATGAATCTACATGGAATTGCGGTACCAACACCAACAATAACTACAGGAGAGTTGTTTTGAATGGTGAAACTTCGTTTATTCCCTTCATCATCATCTTGAGTTCAATAGGATACGAGATTAAACTGTTGAGTTTTGAAATCGTAATTGATAGCTTTGGATTGATTAGTCAAAGTGTTGTATCAGTATTACTTTGTTGTGTTTGTTGCGGATGCTTAGGACATCGACTACTAAATAAAAAAAGAAGACGCAGACTTCATCAAAAAAAGTTCTTCAAGCAAAATGGTGGCCATTTATTACAACAAAAGCTTCTTGAAGATAATGAGAGAGTCAAAATATTTACACAGGAAGAACTTGAACAAGCAACTGATAACTACAATGAAACTACATTTCTTGGTCAAGGAGGATATGGTACAGTTTACAAAGGGGTACTCCAAGACAACACTAGTGTTGCAATCAAAAGGTCAAAGCAAATTCAAGCAAATTTTATTGAACAATTCATTAATGAAGTCATTATTCTCTCTCGAATCAACCACAAAAATATCGTCAAGCTTCTCGGTTGTTGTTTAGAAACTGAGTTTCCTTTGTTAGTCTATGAATTTGTTTCGAATGGGACGCTTTCACACCATATTCACAAGAAAGATCATGAAGAATCGTCTACTATTTCATGGGAAACTCGTCTTAGAATTGCTTCTGAAGTTGCTGGAGCTATCTCTTACATGCATTCTACAGCTTCGACGCCGATTTTTCACAGAGATATCAAGTCTTTGAACGTTCTCTTGGAGGACAATTATAGTGCCAAACTTTCTGATTTTGGGACATCAAGATTTTTCTCATATGATCAAACTCATTTGACTACTGAAGTGCAGGGAACTTTTGGATATATTGACCCTGAGTACTTTAGATCAAGTCAATACACGGAAAAGAGTGACGTTTATAGCTTTGGAGTGTTAATGGTAGAGCTTTTAACTGGGAAGAAGCCTGTCACGTTTGCAAAAGATGAGGGGGAAAATTTATTAGATTACTTCATTTCATTGGAAAAGGCTAATGAGCTTGTTGAAATTCTAGATGCTGAAGTAGCCAAAGAAGAAACTATGGAGGGTGTTAACTTTGTTGCAAAACTCACCACCAAATGTTTAAGAGCACATGGGAAAGAAAGACCCACCATGAAAGAAGTATATTTGGAGCTTGAAGGATTGAAGAAATCATCCCAAGATTGCTTACCAATTACTGAAGAAAAGTTGAATGATCTTCAACCATATGTTATTAGAAACAACACAGAAGGTTGCTCAATTAATGACACTTCTCCCCCAAAAGGATATATTTGTACTGATTCCACCGATTCATGTGTTTCCTATTTGTTTTTAAGAGCATCAAATTCTCAAAATTCTGGCTTCTATTTCGAAGACATATCATTAGGAAAAACCAATTTCTGGGCAAACCGAGTTGATTGTAAATGTATGGGTCCTTTCTATCAATCTACTTTCCAATACAATATTCAAAGTGGTGATAGTTATGAAAAAATAGCAAATGATATTTTTCATGGCTTCACGAGCTGCTCGGTTCTAAGAAGTTTGAACCTTAATTTTACTGTTGATGCAAGTTCTTCCATAGGAAAAAGTTTAGAAATATCGTTGATATGTGCTTGTCCAAGCAAGGATGAAAAAGGCAATGGGATTGCGTCGTTGGTTGTGTATATGCCAAAGCCAAATGAGAGGATTGAATCCATTGCTAGTGTTTTTGGGGTTGAAGAAAAAGGCATTTTGGAAGCCAATATAATTTCTAGTTCAAATCAGCTGATATTCCCATTTACGCCTCTTTTGATTCCGTTGAGCCTAAGAAAGACTTGCACAATGTTACCAAACTCCTCCTTGATGTGTATTCGTTGGAGTGAGAAGCGGAAACTTATTAACAAACTCATGTGGGCTGCAATAGGTTGTGGAATAATATTGGTATGTAGTTTCTTTTTCGGATGCATTGGACATCAACAGCTAATTAGGAAAAGAAGACGTAAACTTTATAAGAAAAAGTTTTTCAAGCACAATGGTGGCATGTTATTGCAGCAAAAGCTAGTTGAAGATAATGAGAGAGTAAAAATATTCACACAGGAAGAACTTGAAGAAGCAACCAATAAGTATAGTGAAAGTAGAATTCTTGGTGAAGGAGGGTATGGTACAGTTTATAAAGGGATACTCCATGATAACACTCTTGTTGCAATCAAAAGGTCAAAGCAAATCGAAGCAAATTGGATCGAACAGTTCATCAATGAAGTTATTGTTCTCTCTCGAATCAACCACAAAAATATTGTCAAGCTTCTGGGTTGTTGTTTGGAGACTGAGTTTCCTTTGCTAGTTTATGAATTTGTTTCAAATGGAACACTTTCATACCATATTCACAATAAATTAGACCACGGAGAATCGTCTTCTCTTTCATGGGAAACTCGTCTCAAAATTGCTTCTGAAGTTGCTAGTGCTATATCTTACATGCATTCTATAGTTTCAACTCCCATTTTTCATAGAGATATAAAGTCATTGAACATACTTTTGGATGATAATAATAGTGCAAAGGTTTCTGATTTTGGAATATCAAGATTTGTGTCATGTGATCAATCCCATTTGACTACAAAAGTGTTGGGAACAGTTGGATATATAGATCCTGAGTACTTCAAATCAAGTCAATACACTGGAAAGAGTGATGTTTATAGCTTTGGAGTCTTGATGATAGAACTTCTAACTAGGAAGCTACCAACTTTTGCCAAAAATGATGGTGGGAACCTATTAGACTACTTCATTTCATTGGAAAGGACTAATCAACTTGTTGAAATTCTAGATGCTACATTGGTGAAGGAAGAGAGGATGGATGTTGTTAACAATGTGGCAGCACTAGCCATAAAATGTTTAAGATCAAATGGGAAAGAAAGGCCTACAATGAAGCAAGTATATTTGGAACTAGAAGGATTGAGAAAGTCTCAAGATTGTTTAGAAATTATTGAAGAAACTCATTCAACTACTTTTTCATTGAACTCATTTGAGATTAGTGATGACGAGCTTGTAAGATGA 4674 35.96 MEHVEEESILEANMISNSTHDYPFTTILVPLGLNQTCKIDAFSYGCRKPRNLEMQRRRRKLYKEKFFRQNGGLLLQQKLFEDNDRVKVFSQEELEQATDNYNETRILGQGGYSTVYKGILQDNTVVAVKRSKQIEATWIEQFINEVIILSPINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKKDLGDQSLSLPWEIRLRIASEIDGAISYMHSIASTPIFHRDIKSPNILLDDKYRAKVSDFGTSRFVSCDQSHLTTKVQGTIGYIDLEYIRSSQYTEKSDVYSFGVLLVELLTTKLPTTFARNEDRNLLDYFVSLENENELVEILDIEAAKEEIWRLLTLWQSSPPNPYLIRNNTEGCSINDNTSPPTGYICTDSFDSCVSYLIVKSNSNNPELGFNNTSLGNKNFLRKRVSCNCEGAFYQYTTEYNVKSGDSYEKIANDIFHGFTSCSLLRRRRILVPLRCVCPSKHEKSNGIKSLAVYMLQSNESIGSIAKDFGVEEETILKANSLSNSSLVFPFTTVLVPLSENLSCIIDESTWNCGTNTNNNYRRVVLNGETSFIPFIIILSSIGYEIKLLSFEIVIDSFGLISQSVVSVLLCCVCCGCLGHRLLNKKRRRRLHQKKFFKQNGGHLLQQKLLEDNERVKIFTQEELEQATDNYNETTFLGQGGYGTVYKGVLQDNTSVAIKRSKQIQANFIEQFINEVIILSRINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKKDHEESSTISWETRLRIASEVAGAISYMHSTASTPIFHRDIKSLNVLLEDNYSAKLSDFGTSRFFSYDQTHLTTEVQGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKKPVTFAKDEGENLLDYFISLEKANELVEILDAEVAKEETMEGVNFVAKLTTKCLRAHGKERPTMKEVYLELEGLKKSSQDCLPITEEKLNDLQPYVIRNNTEGCSINDTSPPKGYICTDSTDSCVSYLFLRASNSQNSGFYFEDISLGKTNFWANRVDCKCMGPFYQSTFQYNIQSGDSYEKIANDIFHGFTSCSVLRSLNLNFTVDASSSIGKSLEISLICACPSKDEKGNGIASLVVYMPKPNERIESIASVFGVEEKGILEANIISSSNQLIFPFTPLLIPLSLRKTCTMLPNSSLMCIRWSEKRKLINKLMWAAIGCGIILVCSFFFGCIGHQQLIRKRRRKLYKKKFFKHNGGMLLQQKLVEDNERVKIFTQEELEEATNKYSESRILGEGGYGTVYKGILHDNTLVAIKRSKQIEANWIEQFINEVIVLSRINHKNIVKLLGCCLETEFPLLVYEFVSNGTLSYHIHNKLDHGESSSLSWETRLKIASEVASAISYMHSIVSTPIFHRDIKSLNILLDDNNSAKVSDFGISRFVSCDQSHLTTKVLGTVGYIDPEYFKSSQYTGKSDVYSFGVLMIELLTRKLPTFAKNDGGNLLDYFISLERTNQLVEILDATLVKEERMDVVNNVAALAIKCLRSNGKERPTMKQVYLELEGLRKSQDCLEIIEETHSTTFSLNSFEISDDELVR 1557
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 12475073 12504393 - Lsi06G007300.1 Lsi06g00730 665460
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00730 1557 ProSiteProfiles Protein kinase domain profile. 664 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 CDD STKc_IRAK 670 938 - -
Lsi06g00730 1557 Gene3D Phosphorylase Kinase; domain 1 1225 1326 - -
Lsi06g00730 1557 Gene3D Phosphorylase Kinase; domain 1 638 739 - -
Lsi06g00730 1557 ProSiteProfiles Protein kinase domain profile. 101 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 SMART serkin_6 1251 1505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 SMART serkin_6 101 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 SMART serkin_6 664 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 SUPERFAMILY Protein kinase-like (PK-like) 650 948 IPR011009 -
Lsi06g00730 1557 ProSitePatterns Protein kinases ATP-binding region signature. 1257 1279 IPR017441 GO:0005524
Lsi06g00730 1557 Gene3D Transferase(Phosphotransferase) domain 1 1327 1545 - -
Lsi06g00730 1557 Gene3D Transferase(Phosphotransferase) domain 1 177 354 - -
Lsi06g00730 1557 Gene3D Transferase(Phosphotransferase) domain 1 740 957 - -
Lsi06g00730 1557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Lsi06g00730 1557 ProSiteProfiles LysM domain profile. 485 529 IPR018392 -
Lsi06g00730 1557 CDD STKc_IRAK 1257 1525 - -
Lsi06g00730 1557 Gene3D LysM domain 473 536 IPR036779 -
Lsi06g00730 1557 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Lsi06g00730 1557 PANTHER LYSM TYPE RECEPTOR KINASE 971 1541 - -
Lsi06g00730 1557 PANTHER LYSM TYPE RECEPTOR KINASE 54 339 - -
Lsi06g00730 1557 Coils Coil 643 663 - -
Lsi06g00730 1557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1375 1387 IPR008271 GO:0004672|GO:0006468
Lsi06g00730 1557 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 366 952 IPR045274 GO:0007166
Lsi06g00730 1557 Pfam Protein kinase domain 1251 1518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 Pfam Protein kinase domain 101 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 Pfam Protein kinase domain 664 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 ProSiteProfiles LysM domain profile. 1034 1082 IPR018392 -
Lsi06g00730 1557 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 971 1541 IPR045274 GO:0007166
Lsi06g00730 1557 Coils Coil 1230 1250 - -
Lsi06g00730 1557 Pfam LysM domain 1107 1148 IPR018392 -
Lsi06g00730 1557 Pfam LysM domain 487 530 IPR018392 -
Lsi06g00730 1557 ProSitePatterns Protein kinases ATP-binding region signature. 107 129 IPR017441 GO:0005524
Lsi06g00730 1557 PANTHER LYSM TYPE RECEPTOR KINASE 366 952 - -
Lsi06g00730 1557 SUPERFAMILY Protein kinase-like (PK-like) 1235 1522 IPR011009 -
Lsi06g00730 1557 Coils Coil 884 904 - -
Lsi06g00730 1557 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 54 339 IPR045274 GO:0007166
Lsi06g00730 1557 SUPERFAMILY Protein kinase-like (PK-like) 85 318 IPR011009 -
Lsi06g00730 1557 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Lsi06g00730 1557 ProSiteProfiles Protein kinase domain profile. 1251 1525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00730 1557 SMART LysM_2 1103 1148 IPR018392 -
Lsi06g00730 1557 SMART LysM_2 486 530 IPR018392 -
Lsi06g00730 1557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00730 Lsi-Chr6:12475073 Lsi06g00745 Lsi-Chr6:13447858 9.43E-142 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83713 PF00069 Pkinase 1.70E-51 CL0016 Lsi PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00730 - - minc:123203463 839.336