Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00742 | ATGTCGGTTGCTCTATCAACAACACTACTTCAATATCAAAAGGATACATCTAAGCATCCCTATAATTCTGAATTCAAAATACTGGATCTCTTCCAATACAGTGTCTACAAAACAACATTACAGAACGGTCTGGTGAGTTGCTCGGCGCTAAGAAGTCAAAACCAACCAGATTATATTGTGGAGAAAAATTCTTCAGTTCCCATGATACTCCAAGTTCCATTGAGATGTGCTTGCCCCACACAAGCTCAAAAAGCTAAAGGGATTGTTTCCTTAGTCGTGTATATGATACAACCAAATGAGAGCATTGGATCCATTGCTAGTGTTTTTGGGGTTAATGAAAATAGCATTTTAGAAGCAAACATGCTCTCAAATTCAACCCACATCTTCCCATTTACGCCTCTTTTGGTTCCCTTGAGCCAAGATGAGACTTGCAAAATTTACCGTTGGTGCAGCTACAAGTCTACCAATACTAATCTTGCATTTATTTTCATATTTGCAGTCTCCATTCCAATAGGTGGCCTAATAACATTACTATGTTGTTTCTTTTGCGGATGCAAAGGAAATCAACTATTATTGAAGAAAAGGAGACGCAAACTTCATAAGAAAAAGTTTTTCAAGCAAAATGGTGGTCTCTTATTGCAACAAAAACTACTCGAAAATAGCGAAAGAGTAAAAATATTCACACAAGAAGAGCTTGAAGAAGCAACAGACAACTACAATGAAAGTAGATTTCTTGGTCAAGGAGGTTATGGTACAGTTTACAAAGGCACCCTCCATGACAATACAGTGGTTGCAATAAAAAAATCCAAGCAAATCGAAACAAACTGGATCGAACAATTCATCAATGAAGTTATTATCCTCTCTCAAATTAACCACAGAAACATCGTCAGACTCTTGGGTTGTTGTTTAGAAACTGAGTTCCCTTTGCTAGTTTATGAGTTTGTTTCAAATGGGACACTTTCACACTATATTCAAAGCCAAAATCCTCAAGAATCACCTTCTCCTTCATGGAAAATTCGTCTCAGAATTGCTTCTGAAGTTGCTGGAGCTATCTCATACATGCACTCTTCAGCTTCAATTCCTATTTACCATAGAGATATCAAGTCTTTAAACATACTGTTGGATGATAAGTATAGTGCAAAGGTATCAGATTTTGGAACATCAAGATTTGTGTCGTGTGATCAATCACATTTGACAACAAAAGTGTTGGGAACTTTTGGATATATCGATCCTGAGTATTTTGTTTCAAGTCAATACACTGACAAGAGTGACGTGTATAGCTTTGGTGTGTTGATGGTAGAGCTTTTAACTGGGAAGGCACCAGTTAGTTTTGCAAAAAATGATGGTAGGAATCTATTGGACTACTTCATTTCATTGGAAAAGGATAATAAACTTGTTGAAATTTTAGACGTTACAAACGACATGGAAGAAAGGATGGAAGTTGTTAATAGTGTTGCAAAACTTGCCACAAAATGTTTAAAATTAAATGGAAAAGAGAGACCCAAAATGAAACAAGTGTATTTGGAATTAGAAGGATTGAGAAAGACTACTGATCATTGTTCAGAAATTAGTGAAGTACAATCAAGTGGAGGATTTTCTTCGTTCTGTGAGAACATTGGAGATGATGAGCTTACAGATGATGGCACTATCCTCATATCCATAACA | 1665 | 36.4 | MSVALSTTLLQYQKDTSKHPYNSEFKILDLFQYSVYKTTLQNGLVSCSALRSQNQPDYIVEKNSSVPMILQVPLRCACPTQAQKAKGIVSLVVYMIQPNESIGSIASVFGVNENSILEANMLSNSTHIFPFTPLLVPLSQDETCKIYRWCSYKSTNTNLAFIFIFAVSIPIGGLITLLCCFFCGCKGNQLLLKKRRRKLHKKKFFKQNGGLLLQQKLLENSERVKIFTQEELEEATDNYNESRFLGQGGYGTVYKGTLHDNTVVAIKKSKQIETNWIEQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSHYIQSQNPQESPSPSWKIRLRIASEVAGAISYMHSSASIPIYHRDIKSLNILLDDKYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFVSSQYTDKSDVYSFGVLMVELLTGKAPVSFAKNDGRNLLDYFISLEKDNKLVEILDVTNDMEERMEVVNSVAKLATKCLKLNGKERPKMKQVYLELEGLRKTTDHCSEISEVQSSGGFSSFCENIGDDELTDDGTILISIT | 555 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 13371424 | 13374268 | + | Lsi06G007420.1 | Lsi06g00742 | 665472 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00742 | 555 | Pfam | LysM domain | 94 | 137 | IPR018392 | - | |
Lsi06g00742 | 555 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 362 | 374 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g00742 | 555 | CDD | STKc_IRAK | 245 | 513 | - | - | |
Lsi06g00742 | 555 | ProSitePatterns | Protein kinases ATP-binding region signature. | 245 | 268 | IPR017441 | GO:0005524 | |
Lsi06g00742 | 555 | ProSiteProfiles | LysM domain profile. | 92 | 136 | IPR018392 | - | |
Lsi06g00742 | 555 | Gene3D | LysM domain | 80 | 145 | IPR036779 | - | |
Lsi06g00742 | 555 | SMART | serkin_6 | 239 | 513 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00742 | 555 | Gene3D | Transferase(Phosphotransferase) domain 1 | 315 | 531 | - | - | |
Lsi06g00742 | 555 | SUPERFAMILY | LysM domain | 92 | 137 | IPR036779 | - | |
Lsi06g00742 | 555 | Coils | Coil | 218 | 238 | - | - | |
Lsi06g00742 | 555 | SMART | LysM_2 | 93 | 137 | IPR018392 | - | |
Lsi06g00742 | 555 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 24 | 529 | IPR045274 | GO:0007166 | |
Lsi06g00742 | 555 | Pfam | Protein kinase domain | 239 | 506 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00742 | 555 | Gene3D | Phosphorylase Kinase; domain 1 | 213 | 314 | - | - | |
Lsi06g00742 | 555 | SUPERFAMILY | Protein kinase-like (PK-like) | 221 | 510 | IPR011009 | - | |
Lsi06g00742 | 555 | PANTHER | LYSM TYPE RECEPTOR KINASE | 24 | 529 | - | - | |
Lsi06g00742 | 555 | ProSiteProfiles | Protein kinase domain profile. | 239 | 513 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00742 | Lsi-Chr6:13371424 | Lsi08g00485 | Lsi-Chr8:12691808 | 6.10E-120 | dispersed | |
Lsi06g00742 | Lsi-Chr6:13371424 | Lsi06g00745 | Lsi-Chr6:13447858 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83714 | PF00069 | Pkinase | 6.30E-52 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00742 | - | - | mcha:111019878 | 722.62 |