Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00742 ATGTCGGTTGCTCTATCAACAACACTACTTCAATATCAAAAGGATACATCTAAGCATCCCTATAATTCTGAATTCAAAATACTGGATCTCTTCCAATACAGTGTCTACAAAACAACATTACAGAACGGTCTGGTGAGTTGCTCGGCGCTAAGAAGTCAAAACCAACCAGATTATATTGTGGAGAAAAATTCTTCAGTTCCCATGATACTCCAAGTTCCATTGAGATGTGCTTGCCCCACACAAGCTCAAAAAGCTAAAGGGATTGTTTCCTTAGTCGTGTATATGATACAACCAAATGAGAGCATTGGATCCATTGCTAGTGTTTTTGGGGTTAATGAAAATAGCATTTTAGAAGCAAACATGCTCTCAAATTCAACCCACATCTTCCCATTTACGCCTCTTTTGGTTCCCTTGAGCCAAGATGAGACTTGCAAAATTTACCGTTGGTGCAGCTACAAGTCTACCAATACTAATCTTGCATTTATTTTCATATTTGCAGTCTCCATTCCAATAGGTGGCCTAATAACATTACTATGTTGTTTCTTTTGCGGATGCAAAGGAAATCAACTATTATTGAAGAAAAGGAGACGCAAACTTCATAAGAAAAAGTTTTTCAAGCAAAATGGTGGTCTCTTATTGCAACAAAAACTACTCGAAAATAGCGAAAGAGTAAAAATATTCACACAAGAAGAGCTTGAAGAAGCAACAGACAACTACAATGAAAGTAGATTTCTTGGTCAAGGAGGTTATGGTACAGTTTACAAAGGCACCCTCCATGACAATACAGTGGTTGCAATAAAAAAATCCAAGCAAATCGAAACAAACTGGATCGAACAATTCATCAATGAAGTTATTATCCTCTCTCAAATTAACCACAGAAACATCGTCAGACTCTTGGGTTGTTGTTTAGAAACTGAGTTCCCTTTGCTAGTTTATGAGTTTGTTTCAAATGGGACACTTTCACACTATATTCAAAGCCAAAATCCTCAAGAATCACCTTCTCCTTCATGGAAAATTCGTCTCAGAATTGCTTCTGAAGTTGCTGGAGCTATCTCATACATGCACTCTTCAGCTTCAATTCCTATTTACCATAGAGATATCAAGTCTTTAAACATACTGTTGGATGATAAGTATAGTGCAAAGGTATCAGATTTTGGAACATCAAGATTTGTGTCGTGTGATCAATCACATTTGACAACAAAAGTGTTGGGAACTTTTGGATATATCGATCCTGAGTATTTTGTTTCAAGTCAATACACTGACAAGAGTGACGTGTATAGCTTTGGTGTGTTGATGGTAGAGCTTTTAACTGGGAAGGCACCAGTTAGTTTTGCAAAAAATGATGGTAGGAATCTATTGGACTACTTCATTTCATTGGAAAAGGATAATAAACTTGTTGAAATTTTAGACGTTACAAACGACATGGAAGAAAGGATGGAAGTTGTTAATAGTGTTGCAAAACTTGCCACAAAATGTTTAAAATTAAATGGAAAAGAGAGACCCAAAATGAAACAAGTGTATTTGGAATTAGAAGGATTGAGAAAGACTACTGATCATTGTTCAGAAATTAGTGAAGTACAATCAAGTGGAGGATTTTCTTCGTTCTGTGAGAACATTGGAGATGATGAGCTTACAGATGATGGCACTATCCTCATATCCATAACA 1665 36.4 MSVALSTTLLQYQKDTSKHPYNSEFKILDLFQYSVYKTTLQNGLVSCSALRSQNQPDYIVEKNSSVPMILQVPLRCACPTQAQKAKGIVSLVVYMIQPNESIGSIASVFGVNENSILEANMLSNSTHIFPFTPLLVPLSQDETCKIYRWCSYKSTNTNLAFIFIFAVSIPIGGLITLLCCFFCGCKGNQLLLKKRRRKLHKKKFFKQNGGLLLQQKLLENSERVKIFTQEELEEATDNYNESRFLGQGGYGTVYKGTLHDNTVVAIKKSKQIETNWIEQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSHYIQSQNPQESPSPSWKIRLRIASEVAGAISYMHSSASIPIYHRDIKSLNILLDDKYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFVSSQYTDKSDVYSFGVLMVELLTGKAPVSFAKNDGRNLLDYFISLEKDNKLVEILDVTNDMEERMEVVNSVAKLATKCLKLNGKERPKMKQVYLELEGLRKTTDHCSEISEVQSSGGFSSFCENIGDDELTDDGTILISIT 555
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 13371424 13374268 + Lsi06G007420.1 Lsi06g00742 665472
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00742 555 Pfam LysM domain 94 137 IPR018392 -
Lsi06g00742 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Lsi06g00742 555 CDD STKc_IRAK 245 513 - -
Lsi06g00742 555 ProSitePatterns Protein kinases ATP-binding region signature. 245 268 IPR017441 GO:0005524
Lsi06g00742 555 ProSiteProfiles LysM domain profile. 92 136 IPR018392 -
Lsi06g00742 555 Gene3D LysM domain 80 145 IPR036779 -
Lsi06g00742 555 SMART serkin_6 239 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00742 555 Gene3D Transferase(Phosphotransferase) domain 1 315 531 - -
Lsi06g00742 555 SUPERFAMILY LysM domain 92 137 IPR036779 -
Lsi06g00742 555 Coils Coil 218 238 - -
Lsi06g00742 555 SMART LysM_2 93 137 IPR018392 -
Lsi06g00742 555 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 529 IPR045274 GO:0007166
Lsi06g00742 555 Pfam Protein kinase domain 239 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00742 555 Gene3D Phosphorylase Kinase; domain 1 213 314 - -
Lsi06g00742 555 SUPERFAMILY Protein kinase-like (PK-like) 221 510 IPR011009 -
Lsi06g00742 555 PANTHER LYSM TYPE RECEPTOR KINASE 24 529 - -
Lsi06g00742 555 ProSiteProfiles Protein kinase domain profile. 239 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00742 Lsi-Chr6:13371424 Lsi08g00485 Lsi-Chr8:12691808 6.10E-120 dispersed
Lsi06g00742 Lsi-Chr6:13371424 Lsi06g00745 Lsi-Chr6:13447858 0 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83714 PF00069 Pkinase 6.30E-52 CL0016 Lsi PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00742 - - mcha:111019878 722.62