Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00745 ATGCTATGCAAGCCACCCTATAGCTCTGAATTCCATAGAGTGGATCTCTTCCCAAACAGTCACTACCAAAAAACATTGGAGAATGGTAGTTTGTATGCTATTGAAGTTCCATGTCAATGCGTGCGTCGTTCCTATCGATATATGACATACTACAGTATTAAGAGTGGTGATAGTTATGAAAAAATAACTTACAATATTTACCAAGGTCTAGTGAGTTGCTCGGCGTTAAGAAGTCAAAACCAACAAGACTATGTCGTGGACAAAAATTCTTCCGCTCCCATGATACTCCAAGTTCCATTGAGATGTGCTTGCCCCACACAAGCTCAGAAGGATAAAGGGATTACATCATTGGTTGTGTATATGATACAACCAAATGAGAGCATTACATCCATTGCTAGTGTTTTTGGGGTTGAGGAACATAGCATTTTAGAAGCAAACATGCTCTCAAATTCAACTCACATCTACCCATTTACGCCTCTTTTGGTTCCTTTGGGACAAAATGAGACTTGCAAAATGTACCCTTACTGCAGCTCCAGATCTACCAACACTAATGATCTAGTTCAATTGATTTTCACATTTGCACTCCCCATTTCAATAGGTGGTATAATAACATTATTATGTTGTTTCTTTTGCGGATGCAAAGGAAATCAACTATTATTGAAGAAAAGGAGACGCAAACTTCATAAGAAAAAGTTTTTCAAGCAAAATGGTGGTCTCTTATTGCAACAAAAACTACTCGAAAAAAGCGAAAGAGTAAAAATATTCACACAAGAAGAGCTTGAAGAAGCAACAGACAACTACAATGAAAGTAGATTTCTTGGTCAAGGAGGTTATGGTACAGTTTACAAAGGCACCCTCCATGACAATACAGTGGTTGCAATAAAAAAATCCAAGCAAATCGAAACAAACTGGATCGAACAATTCATCAATGAAGTTATTATCCTCTCTCAAATTAACCACAGAAACATCGTCAGACTCTTGGGTTGTTGTTTAGAAACTGAGTTCCCTTTGCTAGTTTATGAGTTTGTTTCAAATGGGACACTTTCACACTATATTCAAAGCCAAAATCCTCAAGAATCACCTTCTCCTTCATGGAAAATTCGTCTCAGAATTGCTTCTGAAGTTGCTGGAGCTATCTCATACATGCACTCTTCAGCTTCAATTCCTATTTATCACAGAGATATCAAGTCTTTAAACATACTTTTGGATGATAAGTATAGTGCAAAAGTATCAGATTTTGGAACATCAAGATTTGTGTCTTGTGATCAATCACATTTGACCACAAAAGTGTTGGGAACTTTTGGATATATCGATCCTGAGTACTTTGTTTCAAGTCAATACACTGACAAGAGTGATGTGTATAGCTTTGGAGTGTTGATGGTGGAACTTTTAACTGGGAAGGCACCCGTTAGTTTTGCAAAAAATGATGGAAGGAATCTGTTGGACTACTTCATTTCATTAGAAAAGGGTAATGAACTTGCTGAAATTTTAGACGTTACAATAGACATAGAAGAAAGGATAGAAATTGTTAATAGTGTTGCAAAACTTGCCACAAAATGTTTAAAATCAAATGGGAAAGAGAGACCCACAATGAAACAAGTGTATTTGGAACTAGAAGGATTGAGAAAAACTGTTGATTATTGTTCAGAAATTAGTGAAGTTCAATCAAGTGGAGGGTTTTCATCATTCTATGTAGATGCTGGAGATGGTGAGCTCACAGATGATAGCACCATCTGCATATCTACAACACGACTACAAAGCTTCTAA 1767 36.79 MLCKPPYSSEFHRVDLFPNSHYQKTLENGSLYAIEVPCQCVRRSYRYMTYYSIKSGDSYEKITYNIYQGLVSCSALRSQNQQDYVVDKNSSAPMILQVPLRCACPTQAQKDKGITSLVVYMIQPNESITSIASVFGVEEHSILEANMLSNSTHIYPFTPLLVPLGQNETCKMYPYCSSRSTNTNDLVQLIFTFALPISIGGIITLLCCFFCGCKGNQLLLKKRRRKLHKKKFFKQNGGLLLQQKLLEKSERVKIFTQEELEEATDNYNESRFLGQGGYGTVYKGTLHDNTVVAIKKSKQIETNWIEQFINEVIILSQINHRNIVRLLGCCLETEFPLLVYEFVSNGTLSHYIQSQNPQESPSPSWKIRLRIASEVAGAISYMHSSASIPIYHRDIKSLNILLDDKYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFVSSQYTDKSDVYSFGVLMVELLTGKAPVSFAKNDGRNLLDYFISLEKGNELAEILDVTIDIEERIEIVNSVAKLATKCLKSNGKERPTMKQVYLELEGLRKTVDYCSEISEVQSSGGFSSFYVDAGDGELTDDSTICISTTRLQSF 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13447858 13451359 - Lsi06G007450.1 Lsi06g00745 665475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00745 588 ProSitePatterns Protein kinases ATP-binding region signature. 273 296 IPR017441 GO:0005524
Lsi06g00745 588 CDD STKc_IRAK 273 541 - -
Lsi06g00745 588 Pfam Protein kinase domain 267 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00745 588 SUPERFAMILY Protein kinase-like (PK-like) 250 538 IPR011009 -
Lsi06g00745 588 SMART LysM_2 119 163 IPR018392 -
Lsi06g00745 588 Coils Coil 246 266 - -
Lsi06g00745 588 Gene3D Phosphorylase Kinase; domain 1 241 342 - -
Lsi06g00745 588 Gene3D LysM domain 105 171 IPR036779 -
Lsi06g00745 588 Pfam LysM domain 120 163 IPR018392 -
Lsi06g00745 588 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 557 IPR045274 GO:0007166
Lsi06g00745 588 ProSiteProfiles Protein kinase domain profile. 267 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00745 588 SUPERFAMILY LysM domain 118 163 IPR036779 -
Lsi06g00745 588 SMART serkin_6 267 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00745 588 Gene3D Transferase(Phosphotransferase) domain 1 343 557 - -
Lsi06g00745 588 PANTHER LYSM TYPE RECEPTOR KINASE 26 557 - -
Lsi06g00745 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Lsi06g00745 588 ProSiteProfiles LysM domain profile. 118 162 IPR018392 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00730 Lsi-Chr6:12475073 Lsi06g00745 Lsi-Chr6:13447858 9.43E-142 dispersed
Lsi06g00745 Lsi-Chr6:13447858 Lsi11g00994 Lsi-Chr11:16665270 1.58E-124 dispersed
Lsi06g00742 Lsi-Chr6:13371424 Lsi06g00745 Lsi-Chr6:13447858 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83715 PF00069 Pkinase 1.80E-52 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00745 - - mcha:111019878 771.155