Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00757 ATGGCTGTTCCCGTCGAAGAAGCCATTGCTGCGTTGTCCACATTCTCCCTTGAGGATGATCAGCCAGAGTTGCAAGGACCGGGCGTTTGGGTGTCAACTGAGAGAGGCGCAACTGAGAGTCCAATAGAGTATAGCGATGTTTCCGCGTATCGTCTATCCCTAGCAGAAGACACCAAAGCTCTCAATCAGTTGAATGCTCTTATTCATGAGGGTAAAGAGATGGCATCGGTGCTTTATACATATCGAAGCTGTGTTAAAGCTCTTCCACAGCTACCTGAATCTATGAAGCAAAGTCAAGCTGACCTATATTTGGAAACGTATCAAGTTTTGGATTTGGAAATGAGTCGTCTACGTGAGATTCAGAGATGGCAAGCATCAGCTGCATCGAAGCTTGCTGCTGATATGCAACGTTTCTCAAGGCCTGAGAGGCGCATCAATGGCCCAACAGTAACTCATCTCTGGTCAATGCTGAAATTGCTTGATGTCTTAGTTCAACTTGATCATCTTAAAAATGCCAAGGCAAGCATACCGAACGATTTCTCTTGGTATAAAAGGACCTTCACACAAGTCAGTATTCAGTGGCAAGACTCTGATTCAATGAGAGAAGAATTAGATGACCTACAGATTTTCTTAAGCACACGATGGGCCATTTTATTGAATCTGCATGTTGAGATGTTTCGTGTAAATAATGTGGAAGACATTCTTCAGATCCTCATTGTCTTTGCCGTGGAGTCACTGGAGTTGGATTTTGCACTTCTATATCCAGAGAGGCATGTGCTTTTACGTATTTTGCCTGTTCTTGTTGTATTAGCAACATCATCAGAGAAGGACAGTGAATCACTTTATAAGAGGGTGAAGATTAACAGACTCATTAACATCTTTAAGAATGATCCGGTGATTCCAGCATTTCCAGATCTTCATCTTTCTCCTGCAGCAATCTTGAAAGAGTTGTCGATATACTTCCAAAAATTTTCTGCCCAAGCTCGTTTTCTTACTCTTCCAGCGCCACATGAGCTTCCACCACGTGAAGCACAAGAATATCAGAGACATTACCTTATCATCAATCACATTGGAGCAATCCGTGCAGAGCATGACGATTTCACCATTCGATTTGCATCATCAATGAATCAGCTGCTGCTGTTGAAATCAACAGAGAATCCAGATATTGAATGGTGCAAAGATGTTAAAGGAAACATGTATGACATGGTTGTTGAAGGTTTTCAACTCCTGAGCAGATGGACTGCACGTATTTGGGAACAATGTGCATGGAAGTTCTCTCGCCCATGCAAAGATGCTATTTCTTTGGAATCTCAAGAAACTTCGTCATTCTCAGACTATGAAAAGGTGGTGAGACATAATTATAGTGCAGAGGAAAGGAAAACTCTTGTTGAGCTGGTTAGCTATATAAAGAGCATTGGGTCAATGATGCAGCAGTGTGATACTCTGGTAGCTGATGCTTTGTGGGAAACAGTACATGCTGAGGTTCAAGATTTTGTTCAAAACACATTGGCCACCATGTTACGTACTACCTTCCGGAAGAAGAAAGAAATTTCAAGGATTCTTTCTGATATGCGAACCTTGTCAGCTGATTGGATGGCAAATAGAAGTAAATCTGATTTTGAAGCACAGTCTACGCAAAGAGGTGAAGAAAGTAAAGTGAACTTCTTTTATCCACGGCCGGTTGCACCTACAGCTACTCAGGTCCACTGTTTGCAATTTCTGATTTATGAGGTGGTGTCTGGTGGAAACCTTAGAAAGCCGGGAGGACTTTTTGGGAATAGTGCATCTGAGATTCCCATTAATGATTTGAAGCTGTTGGAGAACTTTTTCTACAAGCTCAGCTTCTTTCTTCACATATTTGATTATACAGCGACTGTTGCAACATTAACGGATCTTGGATTCTTATGGTTTAGAGAGTTTTATTTAGAGACTTCTCGTGTTATTCAGTTTCCTATTGAATGCTCCCTTCCCTGGATGCTGGTGGATTATGTCCTAGAGTCTCAGAATGCAGGCCTTTTTGAGAGTGTTCTATTTCCACTTGACATTTACAATGATTCGGCTCAACATGCGTTGGTCACTTTGAAACAACGTTTTCTCTATGACGAAATTGAAGCTGAGGTCGATCATTGTTTTGATATATTTGTCTCAAAACTATGTGATTCAATCTTTACACATTACAAGAGTTGGGCTGCCAGAGAGATACTTGATTCATCTTTCTTATTTTCCATAGACAATGGAGAAAAATATTCTGTCCATGCTATGAGGTTTAATGCCCTTCTAAAGATCACTAGAGTGAAGTTACTTGGGAGGACCATTGATTTAAGAAGCTTGGTTGCCCAAAGAATGAACAAAAATTTTCGAGAGAACCTAGAATTTTTATTCGATCGGTTTGAGTCTCAAGATCTTTGCAGCATAGTGGAATTGGAAAAGCTGATGGATGTGCTGAAAGTGACCCACGAATTGCTATCCAAAGATATTTTGATTGACTCATTTTGTCTCATGCTAAATGAGATGCAAGAAAACCTCTCTCTTGTGTCATTCTCTAGTCGATTGGCTTCCCAGATTTGGTCAGAGATGCAAAATGACTTCTTGCCGAACTTCATCCTATGCAATACTACTCAACGATTTGTAAGATCATCGAAAGTTCCGTCTATTCCAGTTCAAAAACCATCAGTTCCTCATGCCAAGCCCAGCTTCTACTATGGTACTCAAGACTTGAATTCTGCTCATCAAAGTTTTGCACGGCTGCATAGTGGATTCTTTGGGATGACTCACATGTTGTCCATTGCGAGACTTCTAGGATCTAGATCCTTGCCATGGCTTATTCGAGCACTTCTTGATCATATATCAAATAAGATTGCTATACTTGAGCCGATGATAGCAGGATTGCAAGAAGCATTGCCAAGATCCATAGGACTACTACCATTTGATGGAGGTGTAGCAGGTTGCATCAGATTGATCAATGAAAGTCTTAACTGGGAAGCGAAGTCAGAGCTCAGATTGGAGGTCCTGCATGGAATAAAGGAGATTGGAAGTGTATTATATTTAATTAGCCTTCTTGATATTGTGCTGAGAGAATTAGACATCACACATTTCATGCAGACAGCACCTTGGTTAGGGATAATTCCAGGTGCTGATGGGCAAATATTGCATTCTCAAGATGGAGATAGCCCTATTGTAAGCCTATTCAAGTCGGCAACAAGTGCAATTGTTTCAAATCCTGGAAACCCTAATGGAATGTCATACTATACCATGTCAAAACAGGCTGAAGCAGCAGATCTTCTGTACAAATCTAACTTGAATACTGGAAGTGTTCTAGAATATGCACTTGCCTTTACAAGTGCTGCTCTGGATAAATACTGTAGCAAATGGAGTGCTGCTCCCAAGACTGGATTCATTGACATCACGACTTCAAAAGATTTCTATAGGATATATAGTGGACTCCAAATAGGGTGGGAGTCGTTAATAGAAGCCATGAAGAAGGCGAGAAGACTGAACAACCATGTATTCTCAATGCTGAAGGCACGTTGTCCTCTTGAAGACAAGACTGCCTGTGCCATCAAGCAGAGTGGAGCTCCTCTTCATCGTATTAAATTTGAGAACACTGTCTCTGCTTTTGAGACACTGCCTCAGAAGGGTGCCGTCAACTAA 3651 41.22 MAVPVEEAIAALSTFSLEDDQPELQGPGVWVSTERGATESPIEYSDVSAYRLSLAEDTKALNQLNALIHEGKEMASVLYTYRSCVKALPQLPESMKQSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSIQWQDSDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQILIVFAVESLELDFALLYPERHVLLRILPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPVIPAFPDLHLSPAAILKELSIYFQKFSAQARFLTLPAPHELPPREAQEYQRHYLIINHIGAIRAEHDDFTIRFASSMNQLLLLKSTENPDIEWCKDVKGNMYDMVVEGFQLLSRWTARIWEQCAWKFSRPCKDAISLESQETSSFSDYEKVVRHNYSAEERKTLVELVSYIKSIGSMMQQCDTLVADALWETVHAEVQDFVQNTLATMLRTTFRKKKEISRILSDMRTLSADWMANRSKSDFEAQSTQRGEESKVNFFYPRPVAPTATQVHCLQFLIYEVVSGGNLRKPGGLFGNSASEIPINDLKLLENFFYKLSFFLHIFDYTATVATLTDLGFLWFREFYLETSRVIQFPIECSLPWMLVDYVLESQNAGLFESVLFPLDIYNDSAQHALVTLKQRFLYDEIEAEVDHCFDIFVSKLCDSIFTHYKSWAAREILDSSFLFSIDNGEKYSVHAMRFNALLKITRVKLLGRTIDLRSLVAQRMNKNFRENLEFLFDRFESQDLCSIVELEKLMDVLKVTHELLSKDILIDSFCLMLNEMQENLSLVSFSSRLASQIWSEMQNDFLPNFILCNTTQRFVRSSKVPSIPVQKPSVPHAKPSFYYGTQDLNSAHQSFARLHSGFFGMTHMLSIARLLGSRSLPWLIRALLDHISNKIAILEPMIAGLQEALPRSIGLLPFDGGVAGCIRLINESLNWEAKSELRLEVLHGIKEIGSVLYLISLLDIVLRELDITHFMQTAPWLGIIPGADGQILHSQDGDSPIVSLFKSATSAIVSNPGNPNGMSYYTMSKQAEAADLLYKSNLNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDITTSKDFYRIYSGLQIGWESLIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQKGAVN 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14146610 14232999 + Lsi06G007570.1 Lsi06g00757 665487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00757 1216 Pfam Cytoplasmic Fragile-X interacting family 399 1151 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 Pfam CYRIA/CYRIB Rac1 binding domain 59 217 IPR009828 GO:0031267
Lsi06g00757 1216 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN 2 11 1151 - -
Lsi06g00757 1216 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 134 163 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 754 784 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 257 272 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 1140 1156 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 443 461 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 696 718 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PRINTS Cytoplasmic fragile X mental retardation protein interacting protein signature 629 647 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PIRSF CYFIP 1149 1216 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PIRSF CYFIP 1 1153 IPR008081 GO:0030833|GO:0031267
Lsi06g00757 1216 PANTHER CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED 11 1151 IPR008081 GO:0030833|GO:0031267
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00757 K05749 CYFIP; cytoplasmic FMR1 interacting protein - csv:101209997 2231.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00757 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003019 1 1 2 2 1 1 2 4 1 2 1 1 1 1 1 1 2 2 1 3 2 1 1 3 4 1 1 1 4 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00757 Lsi_Chr06 FPKM 32.357143 35.228371 31.486753 25.63702 59.617538 67.348953 50.820919 29.823137 27.623404 30.825239