Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00766 ATGGCAGCACGTTTGTCTGTCGTCATTCTCAGCGTAGTGCTGGCATTGGCAGCTTTAACCGCGCAAGCCGAGGCGGGGCGGGCTTTCTTCGTCTTTGGAGACTCTCTGGTTGACAATGGCAACAACAACTACCTTGCCACCACCGCCCGAGCGGATTCGTATCCGTATGGCATTGATTTCCCGACGCACCGACCGACTGGTCGCTTCTCTAATGGCCTAAACATCCCTGACTATATCAGTCAGAAACTCGGTTCGGAGTTCTTACTACCGTATTTGAGTCCGGAGTTCAACGGCCGGAGGATGTTGGACGGTGCGAATTTTGCTTCTGCTGGCATTGGCATTTTGAATGACACTGGAATACAGTTTATAAACATAATAAGAATGTGGAGACAATTTGAATATTTCGAAGAGTACCAAAGAAGAGTTGGAAGGATAATAGGAGATGAGAGAACAAAGCAACTGGTGAAAGGAGGGTTGGTTCTTGTTACTGTCGGCGGCAATGATTTCGTGAACAATTACTATCTTGTCCCTTTCTCCGCCAGGTCAAGACAATACGCTCTCCCTGATTACGTCAACCTCCTCATCGTCGAGTATCGAAAACTACTCCTCAGGCTATATGAGCTCGGAGCGCGACGAGTTATGGTGACGGGGACAGGGCCGCTCGGGTGTGTCCCTGCAGAATTGGCGATGCGAGGAAGTAACGGTGGGCAGTGTTCGGCGGAGCTGCAGCGGGCGGCCGCGCTGTATAATCCACAGCTTCTTCAGATGATCAAAGGACTCAACACCCAAGTAGGTTCCAATGTGTTTGTGGCTGTTAATACTCAACAAATGCACAATGATTTCATCTCCAGGTTTGAAACATCAAAAGTGGCATGTTGTGGACAAGGGCCATATAACGGATTAGGGCTTTGCACAGTGGCATCAAACTTATGTTCCAACAGAGATGCATATGCATTTTGGGATGCCTTTCATCCTTCTCAAAAGGCAAATGGGATCATAGTCAAACAAATGTTTTCAGGAACAACTCAATACATGTACCCTATGAACCTCACTACCATCCTTGAATTGGATTCTAGGACTTGA 1083 47.83 MAARLSVVILSVVLALAALTAQAEAGRAFFVFGDSLVDNGNNNYLATTARADSYPYGIDFPTHRPTGRFSNGLNIPDYISQKLGSEFLLPYLSPEFNGRRMLDGANFASAGIGILNDTGIQFINIIRMWRQFEYFEEYQRRVGRIIGDERTKQLVKGGLVLVTVGGNDFVNNYYLVPFSARSRQYALPDYVNLLIVEYRKLLLRLYELGARRVMVTGTGPLGCVPAELAMRGSNGGQCSAELQRAAALYNPQLLQMIKGLNTQVGSNVFVAVNTQQMHNDFISRFETSKVACCGQGPYNGLGLCTVASNLCSNRDAYAFWDAFHPSQKANGIIVKQMFSGTTQYMYPMNLTTILELDSRT 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14692176 14698645 - Lsi06G007660.1 Lsi06g00766 665496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00766 360 SUPERFAMILY SGNH hydrolase 29 342 - -
Lsi06g00766 360 Pfam GDSL-like Lipase/Acylhydrolase 30 335 IPR001087 GO:0016788
Lsi06g00766 360 Gene3D SGNH hydrolase 17 343 IPR036514 -
Lsi06g00766 360 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 5 357 - -
Lsi06g00766 360 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 5 357 - -
Lsi06g00766 360 CDD SGNH_plant_lipase_like 28 340 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00766 - - - csv:101217281 631.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01908 Lsi-Chr3:30439582 Lsi06g00766 Lsi-Chr6:14692176 2.53E-29 dispersed
Lsi06g00766 Lsi-Chr6:14692176 Lsi11g00912 Lsi-Chr11:12565574 0 dispersed
Lsi11g01009 Lsi-Chr11:17101395 Lsi06g00766 Lsi-Chr6:14692176 1.38E-44 dispersed
Lsi06g00766 Lsi-Chr6:14692176 Lsi01g01269 Lsi-Chr1:10925821 1.42E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01815 Bpe14g00064 . . Bma02g00561 . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00766 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001042 5 2 4 6 6 2 2 2 2 2 2 2 2 2 2 2 2 7 2 2 2 2 2 2 2 2 2 4 2 4 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00766 Lsi_Chr06 FPKM 19.874647 19.92024 13.369809 13.92329 17.901161 17.010715 19.121407 14.940644 14.122162 15.243258