Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00782 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAATCAATGGGCTCGAATTTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATCGTCGGGCGTACTCCATCTCAGTGCCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTATGAACCAGGAGACGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGATTGGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGACTTGCTTCACTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACCCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAGATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCTAAGTTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTGAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTAGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAACTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCAGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCAGGGGTCACGCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCGGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACGTATCAATGAAGATACGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAAGAAGAAGCAAGACAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCCCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACTCCTATTGAGCAGGCTGATGAAATAATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATCGATGAAAAGGTTAACAAGGAGAAAAAGAAAGTTTCGAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGAGATGGAAGAGGGGAAAGCTTCTGATGTGTGGTTGGACGTGGAGAGGGATTTGAGAAAATTGTTTGGAGAGGATATTAAGGTGAGACGCTTTTGTGGTAATTTAGTAGTGGTACTAAGTCCTCCTTTTTCGTTTCCTTTGGGTAGCTTTGATGAGGATCTTTCAAGGGATGTTGTTAAGGAGGTGTTACTTTGGGAGCGTCCAGATATAGTGGTCTTGGATGAGATTAGCCACATCGATTACCATTGCCAATTCATTAGAAGTTTACGGGGTGATAGGCATGTTGGAGTGGCCAGGGCAGTTGATGTTCATGGGAAATTCACCATCTTGTTGGCTTTCGACTTTCCTAATACAAGGGCCGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCATATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCATTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAGATTGAAGCAACCTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTACGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAGTCATGGTCGATTGCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCAGAGAGCCGTGATCTTCAGTTGGCTGAGGCTGAGGCTAATCAAACTGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCAGTGCCTGTTACCTCAACCTCCAATGAATTAACGGGTGAACAACCGGACTTGTCTGTGGTACATGAACATGAAACTTCTAATACCATGGACATCGACACAGAGAAAGAAAGTGTACCGGTGAGCTCGGATATTGGTTTATCTGATAACAAACTACCTTCTGCAGTGGGAGAGAATGCATCCCTGCCTGACACTGGATTTGAAGATTCTGATAAAAGTCAAACCATTGATGTTCCTTCTCAAGAACTCTCGGGCCCTGCTGCAAATGGCACTCCAGATGTGACCATTGCGGTCGGAAATAAGATCAGCAACAATTCGGTTGATGGTGCAGCTATTGAAAATGCTAAATCTAGTACCGATATTGTTGAGGAAGTCAAAGATGTTGAAACTCAGCAGCCTCTGGTCGAAACTGAAAATAACTCAGATGTGCATTCGACTAATGAGGATTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTGTGAATGATGGTAACGGGGAACTCCCTCGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 3462 44.31 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDTDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEIIRKELLALLEHDNAKYPIDEKVNKEKKKVSKRTGNGPTAVIPTIDDFEETEMEEGKASDVWLDVERDLRKLFGEDIKVRRFCGNLVVVLSPPFSFPLGSFDEDLSRDVVKEVLLWERPDIVVLDEISHIDYHCQFIRSLRGDRHVGVARAVDVHGKFTILLAFDFPNTRADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKVMVDCKAQAQKEEEIAAESRDLQLAEAEANQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQPDLSVVHEHETSNTMDIDTEKESVPVSSDIGLSDNKLPSAVGENASLPDTGFEDSDKSQTIDVPSQELSGPAANGTPDVTIAVGNKISNNSVDGAAIENAKSSTDIVEEVKDVETQQPLVETENNSDVHSTNEDSAAPASSNEDGPVNDGNGELPRGEGEAMESNV 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15650958 15665681 - Lsi06G007820.1 Lsi06g00782 665512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1005 1021 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 157 176 - -
Lsi06g00782 1153 Pfam pre-mRNA splicing factor component 407 636 IPR021786 -
Lsi06g00782 1153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lsi06g00782 1153 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 750 1015 - -
Lsi06g00782 1153 Gene3D - 5 58 - -
Lsi06g00782 1153 Coils Coil 167 187 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1104 1134 - -
Lsi06g00782 1153 SMART sant 58 105 IPR001005 -
Lsi06g00782 1153 SMART sant 6 55 IPR001005 -
Lsi06g00782 1153 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 400 414 - -
Lsi06g00782 1153 CDD SANT 10 53 IPR001005 -
Lsi06g00782 1153 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lsi06g00782 1153 CDD SANT_CDC5_II 55 106 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 998 1064 - -
Lsi06g00782 1153 PANTHER - 1 634 - -
Lsi06g00782 1153 PANTHER - 750 1015 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 213 234 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 381 421 - -
Lsi06g00782 1153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lsi06g00782 1153 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 634 - -
Lsi06g00782 1153 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 110 150 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1038 1060 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1098 1153 - -
Lsi06g00782 1153 Gene3D - 59 114 - -
Lsi06g00782 1153 Coils Coil 914 947 - -
Lsi06g00782 1153 Pfam Myb-like DNA-binding domain 10 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00782 Lsi-Chr6:15650958 Lsi03g02111 Lsi-Chr3:32331124 3.08E-10 dispersed
Lsi06g00782 Lsi-Chr6:15650958 Lsi08g01097 Lsi-Chr8:19584964 2.35E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25488 PF11831 Myb_Cef 9.80E-51 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00782 K12860 - csv:101205030 1185.24