Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00782 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAATCAATGGGCTCGAATTTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATCGTCGGGCGTACTCCATCTCAGTGCCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTATGAACCAGGAGACGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGATTGGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGACTTGCTTCACTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACCCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAGATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCTAAGTTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTGAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTAGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAACTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCAGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCAGGGGTCACGCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCGGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACGTATCAATGAAGATACGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAAGAAGAAGCAAGACAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCCCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACTCCTATTGAGCAGGCTGATGAAATAATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATCGATGAAAAGGTTAACAAGGAGAAAAAGAAAGTTTCGAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGAGATGGAAGAGGGGAAAGCTTCTGATGTGTGGTTGGACGTGGAGAGGGATTTGAGAAAATTGTTTGGAGAGGATATTAAGGTGAGACGCTTTTGTGGTAATTTAGTAGTGGTACTAAGTCCTCCTTTTTCGTTTCCTTTGGGTAGCTTTGATGAGGATCTTTCAAGGGATGTTGTTAAGGAGGTGTTACTTTGGGAGCGTCCAGATATAGTGGTCTTGGATGAGATTAGCCACATCGATTACCATTGCCAATTCATTAGAAGTTTACGGGGTGATAGGCATGTTGGAGTGGCCAGGGCAGTTGATGTTCATGGGAAATTCACCATCTTGTTGGCTTTCGACTTTCCTAATACAAGGGCCGATTATTTGATAAAGGAAGAGGCCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCATATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCATTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAGATTGAAGCAACCTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTACGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAGTCATGGTCGATTGCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCAGAGAGCCGTGATCTTCAGTTGGCTGAGGCTGAGGCTAATCAAACTGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCAGTGCCTGTTACCTCAACCTCCAATGAATTAACGGGTGAACAACCGGACTTGTCTGTGGTACATGAACATGAAACTTCTAATACCATGGACATCGACACAGAGAAAGAAAGTGTACCGGTGAGCTCGGATATTGGTTTATCTGATAACAAACTACCTTCTGCAGTGGGAGAGAATGCATCCCTGCCTGACACTGGATTTGAAGATTCTGATAAAAGTCAAACCATTGATGTTCCTTCTCAAGAACTCTCGGGCCCTGCTGCAAATGGCACTCCAGATGTGACCATTGCGGTCGGAAATAAGATCAGCAACAATTCGGTTGATGGTGCAGCTATTGAAAATGCTAAATCTAGTACCGATATTGTTGAGGAAGTCAAAGATGTTGAAACTCAGCAGCCTCTGGTCGAAACTGAAAATAACTCAGATGTGCATTCGACTAATGAGGATTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTGTGAATGATGGTAACGGGGAACTCCCTCGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 3462 44.31 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDTDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEIIRKELLALLEHDNAKYPIDEKVNKEKKKVSKRTGNGPTAVIPTIDDFEETEMEEGKASDVWLDVERDLRKLFGEDIKVRRFCGNLVVVLSPPFSFPLGSFDEDLSRDVVKEVLLWERPDIVVLDEISHIDYHCQFIRSLRGDRHVGVARAVDVHGKFTILLAFDFPNTRADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKVMVDCKAQAQKEEEIAAESRDLQLAEAEANQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQPDLSVVHEHETSNTMDIDTEKESVPVSSDIGLSDNKLPSAVGENASLPDTGFEDSDKSQTIDVPSQELSGPAANGTPDVTIAVGNKISNNSVDGAAIENAKSSTDIVEEVKDVETQQPLVETENNSDVHSTNEDSAAPASSNEDGPVNDGNGELPRGEGEAMESNV 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15650958 15665681 - Lsi06G007820.1 Lsi06g00782 665512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1005 1021 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 157 176 - -
Lsi06g00782 1153 Pfam pre-mRNA splicing factor component 407 636 IPR021786 -
Lsi06g00782 1153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Lsi06g00782 1153 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 750 1015 - -
Lsi06g00782 1153 Gene3D - 5 58 - -
Lsi06g00782 1153 Coils Coil 167 187 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1104 1134 - -
Lsi06g00782 1153 SMART sant 58 105 IPR001005 -
Lsi06g00782 1153 SMART sant 6 55 IPR001005 -
Lsi06g00782 1153 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 400 414 - -
Lsi06g00782 1153 CDD SANT 10 53 IPR001005 -
Lsi06g00782 1153 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Lsi06g00782 1153 CDD SANT_CDC5_II 55 106 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 998 1064 - -
Lsi06g00782 1153 PANTHER - 1 634 - -
Lsi06g00782 1153 PANTHER - 750 1015 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 213 234 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 381 421 - -
Lsi06g00782 1153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Lsi06g00782 1153 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 634 - -
Lsi06g00782 1153 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 110 150 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1038 1060 - -
Lsi06g00782 1153 MobiDBLite consensus disorder prediction 1098 1153 - -
Lsi06g00782 1153 Gene3D - 59 114 - -
Lsi06g00782 1153 Coils Coil 914 947 - -
Lsi06g00782 1153 Pfam Myb-like DNA-binding domain 10 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00782 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 1185.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00782 Lsi-Chr6:15650958 Lsi03g02111 Lsi-Chr3:32331124 3.08E-10 dispersed
Lsi06g00782 Lsi-Chr6:15650958 Lsi08g01097 Lsi-Chr8:19584964 2.35E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g605 Blo10g00270 . . . Bpe11g01310 . Bma13g00410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g03418 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00782 . 1 965 MYB-Related Transcription Factor Family AT1G09770 67.0 0.0e+00 1160.6
Lsi06g00782 . 1 965 MYB-Related Transcription Factor Family AT1G09770 67.0 0.0e+00 1160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25488 PF11831 Myb_Cef 9.80E-51 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00782 Lsi_Chr06 FPKM 11.457401 10.984879 0.388179 0.691405 0.0 0.0 0.0 19.342047 19.607864 19.254251