Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g00803 | ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG | 552 | 57.97 | MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 16786457 | 16787008 | - | Lsi06G008030.1 | Lsi06g00803 | 665533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g00803 | 183 | PANTHER | TIM23 | 1 | 183 | IPR045238 | GO:0022857 | |
| Lsi06g00803 | 183 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 57 | 165 | - | - | |
| Lsi06g00803 | 183 | PANTHER | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3 | 1 | 183 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02919 | Lsi-Chr2:35423583 | Lsi06g00803 | Lsi-Chr6:16786457 | 1.10E-60 | transposed | |
| Lsi11g00226 | Lsi-Chr11:2283701 | Lsi06g00803 | Lsi-Chr6:16786457 | 5.24E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g00803 | K17794 | - | csv:101211511 | 320.857 |