Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00807 ATGGACAAAACCGATTCAATCAATGGTTTCTCTGATCTTGTTCAACATCCAGATTTCTCTCAGTATGTTGAAATTGATCCCACTGGCAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTAAAAACATTGGAACATAAGAACATTATGAAATTCTATACTTCTTGGGTAGATACTGCAAATAAGAACATCAACTTTGTTACTGAAATGTTCACTTCTGGGACTTTGAGGCAATTTAGGCTAAAGCATAGGAGAGTTAACGTTAGAGCTGTGAAGCGATGGTGTAGACAAATTTTGAGGGGTCTTCACTATCTCCATAGCCAAGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGACCTTGGTCTTGCTGCTATCCTCCGGAAATCGCATGCTGATCATTGTGTCGGGACACCAGAGTTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACGTTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGGAAAAAACCAGCTGCCTTGTATAAAGTGAAGGATCCAAGCATGCGGCAATTCGTCGAGAAATGCTTGGCACCAGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGATCCTTTTCTCCAAATTGATTTTTGTGAAAGCAAGTCGAAAATTTCAGATTCTCGGGGAGAACTGGACGATTTTGCTTCAACTATAGCACACCCTTTCCTTGAACAAGAAAAAAGATTTAACTCAATTAGGTACAGTTTGGAGGCCTCTGATGAATGGAGGTCAGTTCAGAAGGAACCCGATGGGATTGATCTTTTTGAGGACAATGATAATGATCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAGTATTGTTTTAAGACTTAGGATTGCAGATAAAGAAGGACGTATTCGGAACATATACTTCCCATTTGACACCAAGAACGATACAGCATTAACAGTAGCCACCGAAATGATAGCAGAACTTGATATTACAGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTAGTACCTGACTGGAAGCCAGGGCCTGGCATAGATGAAACACCTCGCATCTCTTACGATGGTGGCTCTCAAAGCTGCAATGACTCTAATCAACCATCTGATATTTCTTTGATAGAGAATAAGCAAAATGGAGCAAAACTCTATCAGATTTTAAACTGCAGCACAGAACAGTTCTCCCTCAAAGCAGATCAGCCTACACAGCCTGTAGTAGAGAGCATACCAAAAGTGTCAAGCCAGCACTATCAGTCAAACTCTGTCCTCCATGAAAACCAAGCTCTTAGTTCTCATAGTTTTAGGCAAAGACATTCTGATGAAAATTACAAGACAACTGACCAAGCAGTCACTGTTGGGTATACCAAAGAAAAATTACCAGATAACAAAGCCAATTTCATTGATAGAACTTCACTAAGAAGCTTATTGGGTTCCCGATCGCTGTCCATGGTTCCATCCTATTGTGAAGATAAATTTCCCTCTCAAATCCATTGGGAAATTAGATGGCTATGGAATTGA 1812 39.62 MDKTDSINGFSDLVQHPDFSQYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLEHKNIMKFYTSWVDTANKNINFVTEMFTSGTLRQFRLKHRRVNVRAVKRWCRQILRGLHYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPAALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDFCESKSKISDSRGELDDFASTIAHPFLEQEKRFNSIRYSLEASDEWRSVQKEPDGIDLFEDNDNDQLENLDNSIKGKIREDGSIVLRLRIADKEGRIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVPDWKPGPGIDETPRISYDGGSQSCNDSNQPSDISLIENKQNGAKLYQILNCSTEQFSLKADQPTQPVVESIPKVSSQHYQSNSVLHENQALSSHSFRQRHSDENYKTTDQAVTVGYTKEKLPDNKANFIDRTSLRSLLGSRSLSMVPSYCEDKFPSQIHWEIRWLWN 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16961907 16965184 + Lsi06G008070.1 Lsi06g00807 665537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00807 603 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Lsi06g00807 603 Gene3D - 374 440 - -
Lsi06g00807 603 SUPERFAMILY Protein kinase-like (PK-like) 35 522 IPR011009 -
Lsi06g00807 603 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Lsi06g00807 603 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 376 431 IPR024678 GO:0004674|GO:0005524
Lsi06g00807 603 SMART serkin_6 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00807 603 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 14 603 - -
Lsi06g00807 603 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 603 - -
Lsi06g00807 603 CDD STKc_WNK 30 289 - -
Lsi06g00807 603 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00807 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Lsi06g00807 603 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00807 Lsi11g00467 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00417 Lsi-Chr2:3474516 Lsi06g00807 Lsi-Chr6:16961907 3.56E-175 dispersed
Lsi06g00807 Lsi-Chr6:16961907 Lsi09g01322 Lsi-Chr9:21071199 0 dispersed
Lsi06g00807 Lsi-Chr6:16961907 Lsi11g00467 Lsi-Chr11:4910270 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83718 PF00069 Pkinase 2.10E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00807 K08867 - csv:101222641 1057.74