Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00816 ATGGAGAATGTGTCTACAATTTTAAACCCATCTCCGCCGTCGTCACCGTCATCGTCTGGTTTATCGACGGTTCCCGATCATCAGCCATCGTCGTCGGCGGCAGCGGTCGAGTCGAACCGGAAACGAGCGAAACGGCCGAGAGAAAGTAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAATGGGTTTCCGAAATTCGTGAGCCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCACCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCTCATCATTTCCCCCGCCCCGCCTCCACCTCCCCCCGCGATGTCCAAGCCGCCGCCGCCAAAGCCGCTTCCATGGAAATCCCAACTCCCCCACTTTCCTCTTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCATCTTCCTTATGTCCATCCTCGCCGGAGGAACTGAGCGAAATCGTCGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTCGACTCAGTGGAAGGGTGGCTTTATTCTTACCCATGGTATAACAGAGTCAGTAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCAACTTCAACTTTCGAAGCTTCCTTATGGCAAAATTAA 768 52.21 MENVSTILNPSPPSSPSSSGLSTVPDHQPSSSAAAVESNRKRAKRPRESNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGTAAILNFPELAHHFPRPASTSPRDVQAAAAKAASMEIPTPPLSSSSSSSSSSSSSSSSSLCPSSPEELSEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVSNADHQVQEDYGFFKEQILMADYTDTLIPTSTFEASLWQN 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17232586 17233353 - Lsi06G008160.1 Lsi06g00816 665546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00816 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 254 - -
Lsi06g00816 255 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Lsi06g00816 255 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Lsi06g00816 255 MobiDBLite consensus disorder prediction 1 37 - -
Lsi06g00816 255 MobiDBLite consensus disorder prediction 144 170 - -
Lsi06g00816 255 MobiDBLite consensus disorder prediction 121 170 - -
Lsi06g00816 255 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lsi06g00816 255 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lsi06g00816 255 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Lsi06g00816 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 254 - -
Lsi06g00816 255 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Lsi06g00816 255 MobiDBLite consensus disorder prediction 1 59 - -
Lsi06g00816 255 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Lsi06g00816 255 MobiDBLite consensus disorder prediction 38 52 - -
Lsi06g00816 255 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02820 Lsi-Chr2:34357667 Lsi06g00816 Lsi-Chr6:17232586 7.61E-50 dispersed
Lsi04g02331 Lsi-Chr4:30517216 Lsi06g00816 Lsi-Chr6:17232586 7.02E-61 dispersed
Lsi06g00816 Lsi-Chr6:17232586 Lsi08g01086 Lsi-Chr8:19470778 6.40E-56 dispersed
Lsi09g01688 Lsi-Chr9:25348235 Lsi06g00816 Lsi-Chr6:17232586 3.26E-42 transposed
Lsi11g00240 Lsi-Chr11:2429121 Lsi06g00816 Lsi-Chr6:17232586 1.28E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25491 PF00847 AP2 3.00E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00816 K09286 - csv:101219745 378.637