Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00827 ATGCCTCCATCTCCAGCTCACAGGAAGTCATGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGACCATTTCCTCTTCAGAAAACTAACTGATTCTCAGTGCCAAGTTTTATTAGATTGCATGCAAAGAGTTGAGGTCACACCCGGGCAAATTGTAGTCGAACAAGGTGGCGAAGGTGACTGTTTTTATGTGGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAGCCACGGAGAGGTTCCTCGGATTCTGCAACACTATACAGCTGAGAAGCTCTCTTCCTTCGGGGAACTGGCTTTGATGTATAACAAACCACTTCAAGCCTCGGTACGTGCTGTGACAAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATATCAGAATTTTCTAACTTGTCATCTTTGAAATTGCTTCGATCTGTGGACCTTTTGTCGAAGTTAACAATCTTGCAATTGAGTCAAATTGCAGACTCCCTTTCTGAAGTTCACTTCTCAGATGGGGAGCTGATTGTTGATGGGACAGAAGACTTATGTTCACTGCACATTATTCAAAAGGGACAAGTGAGGATTACTTTTGATGCGGAGTTAATGAGCAGTTCAAATGTTTACAGCTTCAATTATGCCAGTCAAAGAGAGGACAATGCTATGCAGAGTGATAACGAGATCTCAGCTATTAGGAAAGAGGGAAGTTATTTTGGCGAATGGGCACTTCTTGGTGAGCGTATCGGCTTCTTACGTGCAGTTGCTGTGGGAGATGTTGTGTGTGCTATTTTAACAAAGGAAAAGTTTGAATCAGTTGTTGGCCCTTTACCAAATCTCTCTCAAGATGATCAAAAGGTGAAAGAACACTCTTCAAACTCTCTCCATCAATCTGCCAAAATTATGGATATTTCAGCTCTTTCAAAAGTTGAGCTCTCTGATCTGGAGTGGAAAATGTGTTTATATTCCACGGAATACAGTGAAATTGGGCTAGTTCGGTTAAGGAACACAGAAACTATGCTTAGTTTAAAAAGGTTTACAAGAGAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTTGAAGGAAAAAAATCTTATGAAGAGCATCAGTTCTTCAGCTTGCGTGCCGCAACTTCTCTGCACATGTTTTGATCAATCACATGCTGGCATATTGCTAAAGACATGCCTTGCTTGTCCTTTGTCTTCGATACTTCATGTCCCACTCGATGAATCTTCTGCACGTTTCTTTGCAGCCTCTCTTGTTATGGCACTGGAAGATTTGCACAAGCTCGGTGTTCTCCACAGAGGAATCTCCCCTGATGTTCTAATGTTGGATCAAAATGGACGCATACAGTTAGTAGACTTCAGATTTGGGAAAAGAACTTTGGGCGAGAGAACATATACTATTTGCGGGATGGCCGACTTTTTAGCACCCGAGATAGTTCAAGGCAATGGTCATGGTTTTGCTGCTGACAGGTGGGCAGTGGGAGTCTTAATCTATTTCATGCTGAAAGGTGAAATGCCATTTGGATCGTGGCGACGAAGCGAGCTCGATACTTTTTCAAAGATTGCAAAAGGACAGTTAAGTCTTCCCCAAATTTTCAGTCCTGAAGCAATGGATCTCATCGTCAAGGTAATGCTAGTGATCAACAATCTCCTCTACCCTTTCCCATTCCCATGTACTTTGCTAAGCCAATCATATATAGTAATTTTCACCTTTTGTAATAAAAAATATGATCAGTTACTTGAAGTTGATGAGAAGAAAAGACTTGGAAACGAGAACCAAAACTCTGTTAGAAGTCATCCATGGTTTGATGGCGTTGATTGGAAGGGGATCCATGACGGTACCTTTCCCGTTCCTGAGACAATAACTTCTCGTGTAGCTCAATATTTGGAGAGCTACCCTGAAGATTGCAGTGTTTCTTTAATTAAACCACCTCAAGATCTTGAAGAACAGGATGCCCCCGATTGGATCAACGACTGGTAG 1995 42.31 MPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVTPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRILQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSKLTILQLSQIADSLSEVHFSDGELIVDGTEDLCSLHIIQKGQVRITFDAELMSSSNVYSFNYASQREDNAMQSDNEISAIRKEGSYFGEWALLGERIGFLRAVAVGDVVCAILTKEKFESVVGPLPNLSQDDQKVKEHSSNSLHQSAKIMDISALSKVELSDLEWKMCLYSTEYSEIGLVRLRNTETMLSLKRFTREKVKRLGLEAQVLKEKNLMKSISSSACVPQLLCTCFDQSHAGILLKTCLACPLSSILHVPLDESSARFFAASLVMALEDLHKLGVLHRGISPDVLMLDQNGRIQLVDFRFGKRTLGERTYTICGMADFLAPEIVQGNGHGFAADRWAVGVLIYFMLKGEMPFGSWRRSELDTFSKIAKGQLSLPQIFSPEAMDLIVKVMLVINNLLYPFPFPCTLLSQSYIVIFTFCNKKYDQLLEVDEKKRLGNENQNSVRSHPWFDGVDWKGIHDGTFPVPETITSRVAQYLESYPEDCSVSLIKPPQDLEEQDAPDWINDW 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17574255 17578005 + Lsi06G008270.1 Lsi06g00827 665557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00827 664 SUPERFAMILY cAMP-binding domain-like 7 135 IPR018490 -
Lsi06g00827 664 SMART cnmp_10 152 291 IPR000595 -
Lsi06g00827 664 SMART cnmp_10 26 149 IPR000595 -
Lsi06g00827 664 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 1 551 - -
Lsi06g00827 664 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 582 664 - -
Lsi06g00827 664 Pfam Cyclic nucleotide-binding domain 45 134 IPR000595 -
Lsi06g00827 664 ProSiteProfiles cAMP/cGMP binding motif profile. 152 278 IPR000595 -
Lsi06g00827 664 ProSiteProfiles cAMP/cGMP binding motif profile. 26 134 IPR000595 -
Lsi06g00827 664 Gene3D Jelly Rolls 2 134 IPR014710 -
Lsi06g00827 664 SMART serkin_6 324 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00827 664 PRINTS cAMP-dependent protein kinase signature 272 284 - -
Lsi06g00827 664 PRINTS cAMP-dependent protein kinase signature 62 76 - -
Lsi06g00827 664 PRINTS cAMP-dependent protein kinase signature 97 106 - -
Lsi06g00827 664 PRINTS cAMP-dependent protein kinase signature 47 61 - -
Lsi06g00827 664 Pfam Protein kinase domain 328 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00827 664 Gene3D Jelly Rolls 140 299 IPR014710 -
Lsi06g00827 664 CDD CAP_ED 152 284 IPR000595 -
Lsi06g00827 664 CDD CAP_ED 26 134 IPR000595 -
Lsi06g00827 664 Gene3D Phosphorylase Kinase; domain 1 316 401 - -
Lsi06g00827 664 SUPERFAMILY Protein kinase-like (PK-like) 317 617 IPR011009 -
Lsi06g00827 664 ProSiteProfiles Protein kinase domain profile. 317 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00827 664 Gene3D Transferase(Phosphotransferase) domain 1 402 549 - -
Lsi06g00827 664 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 1 551 - -
Lsi06g00827 664 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 582 664 - -
Lsi06g00827 664 SUPERFAMILY cAMP-binding domain-like 145 283 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00827 Lsi-Chr6:17574255 Lsi09g01229 Lsi-Chr9:19708524 3.73E-28 dispersed
Lsi06g00827 Lsi-Chr6:17574255 Lsi06g00299 Lsi-Chr6:3436514 8.85E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83719 PF00069 Pkinase 6.60E-29 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00827 - - csv:105436308 1142.1