Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00828 ATGATTGGTGAAGTCATGGAACAGCAGCCAGAGAAGAATACAGGAACCACCACACAGCTGATGGATGATTCTCGCAAAGTAGATTCTGAACAAGTCTCAGCCATTGAAGAATCGATGATCCGGTTAAGTTCGATTATTTTTTTCCTCTTTTCTGTGTTCCTTGTTGTTGAAGCTCAAATTGATTCTCAAGATGCTGAAAATGGTGCTTTTCAGCCAAGTCTTGGCTTTGTGATAGGGATTTTGGGAGTTATGTTCTTGTTGACATTTATTCTCCTTGTCTATGCAAAGTTCTGCCATAGAAGATCTTCTGTTCGAGGGGATGATGTAAACCATCCTAGACAAATCAGGTCAAGTTCTCGGTTTTCCGGAATCGATAAGACGGTGATCGAGTCCCTTCCATTCTTTAGATTCTCCACACTGAAAGGTTCCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTCGAAGATATCGAAATTCTCCGGTTGTTGCCAAAGTGCAAACATGCATTTCATATCAACTGCATCGATCATTGGCTCGAAAAACATGCTAGCTGCCCTCTTTGCAGGCAAAGAGTTGGCTCTGAAGACTTGAAGCTTCTTGCTAATTCAAACAGCACGAGGTTCTTATTGAGCAACTTATCAGAGATGAAACAAGACTCAAACATAGAGCTCTTTATACAAAGAGAAGAAGAAGAAGAACAACTACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAAGAGTGATAAAGAAGAGGAAATGTTGATACAAAAGGTTTGTGGTGATGAAGATGAGAAAATGAAGAACTTACACAGACACAACCACAAAATTATCGTATCCGATTTCGTTTTCATGAATCGATGGAGCAACGTAAGTTCATCAGACCTGATGTTCTTGAACAAGGAGATGATTGATGCCATTTCAAGCAGTAGATTCACTTCCTTGAAAACAGATATAGAACAGTCAACGCTGCCAAAATCAATGCAAATTGAAGAAATCTTGAAGATCAAGGAGGAGATGGAAATAAAGAGAACATTTGAAACCAAACTCAACACAGTAAGCCAAAGCAATTCAATTCTGGGATTCCCTTCTACATCACAATCTGCTGCAAATCCAAGTCAAACAACAAGAATTACAAGCCCAGATGCAAGACGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGTGATGAAGATCTGTATATGAATTTTAACAGAAAAGTTGAAAGTGGGGAATCTTCTGATCTGGGAAAGAATGTAAAGCAAGAAAGAATGAGACAAATTTGGTACCCAATTGCTAAAAGAACAGTCCAATGGTTTGCCAATAGAGAAACAAGGTTTCAACCAGCTGAGAACAGACAACAGACAGTAGAAACTGTATAA 1410 39.15 MIGEVMEQQPEKNTGTTTQLMDDSRKVDSEQVSAIEESMIRLSSIIFFLFSVFLVVEAQIDSQDAENGAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRSSVRGDDVNHPRQIRSSSRFSGIDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVGSEDLKLLANSNSTRFLLSNLSEMKQDSNIELFIQREEEEEQLLHGSSRFSIGRSFRKILKSDKEEEMLIQKVCGDEDEKMKNLHRHNHKIIVSDFVFMNRWSNVSSSDLMFLNKEMIDAISSSRFTSLKTDIEQSTLPKSMQIEEILKIKEEMEIKRTFETKLNTVSQSNSILGFPSTSQSAANPSQTTRITSPDARRSVSEITGISRFGDEDLYMNFNRKVESGESSDLGKNVKQERMRQIWYPIAKRTVQWFANRETRFQPAENRQQTVETV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17610309 17612051 - Lsi06G008280.1 Lsi06g00828 665558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00828 469 MobiDBLite consensus disorder prediction 1 24 - -
Lsi06g00828 469 CDD RING-H2_PA-TM-RING 148 191 - -
Lsi06g00828 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 199 IPR013083 -
Lsi06g00828 469 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Lsi06g00828 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 59 460 - -
Lsi06g00828 469 SUPERFAMILY RING/U-box 128 195 - -
Lsi06g00828 469 Pfam Ring finger domain 148 191 IPR001841 -
Lsi06g00828 469 MobiDBLite consensus disorder prediction 371 392 - -
Lsi06g00828 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 59 460 - -
Lsi06g00828 469 SMART ring_2 149 190 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00828 Lsi11g00482 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01890 Lsi-Chr5:26073667 Lsi06g00828 Lsi-Chr6:17610309 4.50E-22 dispersed
Lsi06g00828 Lsi-Chr6:17610309 Lsi06g01233 Lsi-Chr6:22715226 2.30E-52 dispersed
Lsi09g00240 Lsi-Chr9:2529297 Lsi06g00828 Lsi-Chr6:17610309 7.27E-09 dispersed
Lsi09g00690 Lsi-Chr9:7832170 Lsi06g00828 Lsi-Chr6:17610309 1.11E-11 dispersed
Lsi11g00524 Lsi-Chr11:5546761 Lsi06g00828 Lsi-Chr6:17610309 7.39E-25 dispersed
Lsi06g00828 Lsi-Chr6:17610309 Lsi06g00829 Lsi-Chr6:17612827 3.75E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00828 K10664 - csv:105436309 512.686