Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00853 ATGAGTGCTTCAAGGTTTGTTAAATGTGTTACTGTTGGAGATGGAGCTGTTGGGAAAACTTGTATGCTCATCTGTTACACTAGCAACAAGTTCCCTACTGATTATATTCCTACAGTTTTTGACAACTTCAGTGCTAATGTGGCTGTGGATGGGAATATTGTCAACTTGGGATTATGGGACACTGCTGGTCAAGAAGATTACAGCAGACTTAGGCCACTGAGTTATAGAGGTGCAGATGTTTTTGTTCTGGCTTTCTCGTTAATCAGTAAGGCTAGTTATGAGAATGTTCTCAAAAAGTGGATGCCAGAACTTAGACGATTTGCCCCTAGTGTTCCTATTGTTCTAGTTGGCACAAAATTGGAAGGGACTCATTTGGTTAGTTTCATGCAGGGAGAAGAGCTTAGGAAACAAATTGGTGCTGCTGCATACATTGAATGTAGCTCCAAGACTCAACAGAATGTCAAAGCTGTTTTTGACACTGCAATCAAGGTTGTTCTACAGCCACCAAGGAGAATCGAGATGACTAGGAAGAGGAGGAGCCGAAGCAGGTGCATTGTGTGTGGTGGCTGTGCTGTGTAA 579 42.66 MSASRFVKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADVFVLAFSLISKASYENVLKKWMPELRRFAPSVPIVLVGTKLEGTHLVSFMQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRIEMTRKRRSRSRCIVCGGCAV 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17968953 17971612 + Lsi06G008530.1 Lsi06g00853 665583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00853 192 ProSiteProfiles small GTPase Rab1 family profile. 2 190 - -
Lsi06g00853 192 ProSiteProfiles small GTPase Ras family profile. 2 186 IPR001806 GO:0003924|GO:0005525
Lsi06g00853 192 PANTHER RHO FAMILY GTPASE 1 187 IPR003578 GO:0005525|GO:0007264
Lsi06g00853 192 Pfam Ras family 8 166 IPR001806 GO:0003924|GO:0005525
Lsi06g00853 192 SMART rab_sub_5 7 168 - -
Lsi06g00853 192 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC7 1 187 - -
Lsi06g00853 192 SMART rho_sub_3 9 168 IPR001806 GO:0003924|GO:0005525
Lsi06g00853 192 SMART ras_sub_4 4 168 - -
Lsi06g00853 192 Gene3D - 1 171 IPR027417 -
Lsi06g00853 192 TIGRFAM small_GTP: small GTP-binding protein domain 7 160 IPR005225 GO:0005525
Lsi06g00853 192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 166 IPR027417 -
Lsi06g00853 192 CDD Rop_like 6 166 - -
Lsi06g00853 192 ProSiteProfiles small GTPase Rho family profile. 1 165 - -
Lsi06g00853 192 PRINTS Transforming protein P21 ras signature 109 122 - -
Lsi06g00853 192 PRINTS Transforming protein P21 ras signature 47 69 - -
Lsi06g00853 192 PRINTS Transforming protein P21 ras signature 143 165 - -
Lsi06g00853 192 PRINTS Transforming protein P21 ras signature 7 28 - -
Lsi06g00853 192 PRINTS Transforming protein P21 ras signature 30 46 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00853 Lsi11g00250 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00853 Lsi-Chr6:17968953 Lsi08g01305 Lsi-Chr8:21409246 2.10E-90 dispersed
Lsi02g02297 Lsi-Chr2:29563069 Lsi06g00853 Lsi-Chr6:17968953 6.82E-10 transposed
Lsi07g01090 Lsi-Chr7:16297269 Lsi06g00853 Lsi-Chr6:17968953 3.03E-102 transposed
Lsi10g00494 Lsi-Chr10:7102355 Lsi06g00853 Lsi-Chr6:17968953 2.11E-99 transposed
Lsi11g00250 Lsi-Chr11:2550722 Lsi06g00853 Lsi-Chr6:17968953 5.82E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00853 K04392 - csv:101208639 348.206