Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00857 ATGGGTGAAGTAGGGAATCGAGAGATGGATAATTTATCCCCGCTAAATGCTCAAACTGATAGTGTGGAACCGGGTAATGTTGTTTCCTCTGATGTTCCTTCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGATGGTTTTGCCCATTGTAACAAAAGCGCCTCATCCTGCGAGAAAGCCAGATTCTCCAAAGGCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCGCGCTGCTTAAAGCTGTACTGCGAGTGTTTTGCATCTGGAATATACTGTGATGGTTGCAACTGCACAAATTGCCATAACAATGTAGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGTAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGGTCGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTGAAGAAGTATTGTGAATGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTCTTCCATGGTGACCATGTCAACAACTTGGCTTATATTCAACAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGCCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCATCTCTCTTCCCAGTTGCTCATGTTGATAATGGCACCCCTGCAGCACCAGGGCCTTCAAAGTTTTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCACACGACTTGAAGGAGCTCTGTTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAACTTAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGATCCACCACAGATTTCTCGTGCTTCATCTACTGGAGATGGGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGATGAGTGTGGAAGTTCAAACCAAAGTGATAGGAGTGTACATGACAATTCCAATTCAGATAGTTCGGATATGACAAGAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACGAGATACAATGTTTACGGGAGCTGGTCTAGCTGATGGGTCGGGAGGCCATGATTGCAACACATCATCACATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATTGAGCAGGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATTAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCACAGCAACAATGCAACCTCAAATAATGGTTGCCAACAGAAATCCATTAGCAATGGGGTTGTAAAAACTGTCGCTCTCTCGGCACCCAGATTACCGCCAGTAGATACTGCAGCTCGTCATCCAAATAACGATCTCGTACTCAAAATTCTACCCCTTTCTAAAAATAGGAAGAGTAAACCACAGGTTGACAGAGAAGTGTAG 1797 44.63 MGEVGNREMDNLSPLNAQTDSVEPGNVVSSDVPSKKLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLMVLPIVTKAPHPARKPDSPKARSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSLFPVAHVDNGTPAAPGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKNLAEQRNAEKQINDPPQISRASSTGDGSQHQKAEEKAADDECGSSNQSDRSVHDNSNSDSSDMTRARPMSPGTLALMCDERDTMFTGAGLADGSGGHDCNTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENHSNNATSNNGCQQKSISNGVVKTVALSAPRLPPVDTAARHPNNDLVLKILPLSKNRKSKPQVDREV 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18021992 18029130 + Lsi06G008570.1 Lsi06g00857 665587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00857 598 MobiDBLite consensus disorder prediction 527 546 - -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 524 546 - -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 427 446 - -
Lsi06g00857 598 SMART CXC_2 206 247 IPR033467 -
Lsi06g00857 598 SMART CXC_2 121 161 IPR033467 -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 408 426 - -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 384 407 - -
Lsi06g00857 598 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 54 548 - -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 1 33 - -
Lsi06g00857 598 PANTHER TESMIN/TSO1-RELATED 54 548 IPR028307 -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 95 116 - -
Lsi06g00857 598 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 29 90 - -
Lsi06g00857 598 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
Lsi06g00857 598 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Lsi06g00857 598 PANTHER TESMIN/TSO1-RELATED 29 90 IPR028307 -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 384 449 - -
Lsi06g00857 598 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 99 116 - -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 50 69 - -
Lsi06g00857 598 MobiDBLite consensus disorder prediction 11 28 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00857 Lsi11g00253 CCT
Lsi06g00857 Lsi11g00253 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00857 Lsi-Chr6:18021992 Lsi09g01305 Lsi-Chr9:20917935 4.49E-28 dispersed
Lsi11g00253 Lsi-Chr11:2562915 Lsi06g00857 Lsi-Chr6:18021992 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25496 PF03638 TCR 3.20E-12 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00857 - - csv:101222405 1019.61