Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00869 ATGATCGCTTCTTCGATTTCTTCTTCCTCTATCTCCTTCATCGTCATCTTTGTCCCAATCTTTATCTCCATCTCTCTTTGCCAATTTAAACCCTCTTCCGATCACATCGTATTCCAAACCCTAACTCCAAACTACTCACCCGTCGATCCATTTCCGTCAAAGAACCTAACTGACGGGAACCGAGTCTTGCGGAAGAACTACATTGTTCGCTTCCTCCAATACAGGGAGGCGCAGGAGCATCGAGTCTATCTGGAATCGCGTGTTAGATCGGGCGGCTGGGAATGGATCGAGAGGCGGAACCCTGCTTCCAAGTATCCAACCGATTTCGGCTTGGTGTCAATTGAGGACTCGGTGAGAGGGGAGCTGATTGAGGAGATTGAGGAATTGGAGCTTGTCAAGGATGTGAATGTAGATGCAAGTCATGTCAGGGGTTTGCTAACAGAGGATGGGGGTAGAGTTGGGGCTTTTGTCGACGGGAAGAAGCGTCCGGGGAAGATTTTCACTTCCATGTCGTTTAAAGAAGGAGATGGGGAACGTTATACGGCAATTAGCAATGCCTCTAATAGATGGGGACGACATCTGTCGATGGAGAGATCCCAAGTTACCTCACTATTTGGAGCAGATTCTCTTTGGGCAAAAGGGTATACCGGTTCCAAAGTCAAGATGGCTATATTCGATACTGGTATTCGTGCTAATCACCCACATTTTAGGAATATCAAGGAGCGAACAAATTGGACCAATGAAGATACTTTAAATGATAATCTTGGACATGGGACATTTGTTGCTGGTGTCATTGCAGGTGGAGATGAAGAATGTCTAGGGTTTGCTCCGGATACGGAGATATATGCTTTTCGTGTGTTTACAGATGCACAGGTGTCATACACTTCATGGTTCCTTGATGCATTCAACTATGCAATTGCTACCAATATGGATGTATTAAATTTAAGCATTGGTGGGCCAGATTACTTGGATCTTCCATTTGTGGAGAAGATTTGGGAAATAACAGCAAATAATATCATCATGGTTTCTGCAATTGGTAATGATGGACCACTATATGGGACTTTAAACAATCCTGCAGATCAGAGTGACGTCATTGGTGTTGGTGGTATTGACTACAATGATCATATTGCTTCGTTTTCCTCACGTGGCATGACTACTTGGGAGATGCCTCATGGTTATGGTCGTGTGAAACCAGATATTGTTGCATATGGTCGGGAAATAATGGGATCCAAAATTAGTACTGGGTGCAAAAGTTTATCAGGGACTAGTGTGGCGAGTCCTGTGGTTGCTGGTGTGGTATGTCTACTTGTTAGTGTCATCCCTGAAAGCCAGCGGAAGGTTATTTTAAATCCAGCTAGCATGAAACAAGCACTTGTTGAGGGAGCTGCAAAGCTTGTTGGCCCTAATATGTACGAGCAAGGAGCGGGCAGAGTTGATCTGTTAGAGTCGTATGAAATACTTAAGAGCTACCAACCCCGGGCAAGCATCTTCCCTGGTGTTCTTGACTATACAGATTGCCCTTATACGTGGCCCTTTTGTCGCCAACCTCTTTATGCAGGTGCAATGCCTATTATTTTCAATGCTACCATTTTGAATGGGATGGGTGTAATTGGCTATGTTGAAGGTCAACCAACTTGGCATCCTTTGGATGAAGAAGGAAATCTCTTGAGCATTCACTTCACTTATTCTAAGGTCATTTGGCCTTGGACTGGTTACATTGCACTTCATATGCAAATTAAGGAAGAAGGTGCACAATTTTCTGGAGAAATTGAGGGCAATGTGACTCTAACAGTATATAGTCCTCCATCGAGAGGAGAGAAGAACCGCCGGATTAGTACTTGTGTGCTACAGCTGAAGTTAAAAGTAGTTCCTACACCTCCAAGATCAAAACGGATTTTATGGGATCAATTTCATAATATCAAATATCCTCCTGGTTATATTCCTAGAGATTCCTTGGATGTACGCAATGACATTCTGGACTGGCATGGAGACCACCTGCATACAAATTTTCATATCATGTTTAACATGCTAAGAGATGCTGGGTACTATGTTGAAACGCTTGGTTCTCCTCTTACATGCTTTGATGCTCGCCAATATGGGACACTTCTACTAGTGGATCTTGAAGATGAGTACTTCAAAGAGGAAATTGAAAAGTTGAGGGACGATGTTATGATTACTGGGTTGGGATTGGCTGTGTTTTCTGAATGGTATAATGTAGAAACAATGGTAAAGATGAGGTTCTTTGATGATAACACGAGAAGCTGGTGGACACCAGTTACTGGAGGTGCAAATATTCCTGCACTCAATGATCTTTTAGCCCCATTTGGTATTGCTTTCGGGGATAAGATTTTGAATGGTGATTTTTCTATTGATGGTGAACAGAGTCGGTATGCATCAGGAACAGATATTGTGAGGTTTCCACAAGGTGGTTATGTGCATAGTTTCCCTTTCGTTGATAGCTCAGAGAGTGGGGTGGCTCAGAGCATACTAACATCTAACATGAATAAGGTAACTTTTCCTATTTTGGAAGTTCAAAAGGGGGAATTAGCAGACTTTCCAATTCTTGGCCTATTAGAGGCGGGAGAAGGCCGCATCACAGTCTATGGAGATTCAAATTGTCTGGATAGCAGCCATATGGTTACAAATTGCTATTGGCTGCTGAGAAAAATATTAGATTTTACCAGTGGAAATATTAGAGATCCAGTACTATTCACTAAGTTTTCCAAACGAAATTCACCTCTGTATCTGGAAAACAACAAACTACCATCTCGAAGAAGTGATGTAAACTTCTCTTTGTATTCTGCTGTTGCTGGAAAGGAATTGATATGCAGGAGTGATTCTAGGTTTGAAGTATGGGGGACCAAGGGATACAGTATACAGGTCAGGGGAAGAAATCGAAGGTTGCCTGGATTTCCTGTAATCGACTTGGGAAGAGGCTTGAATTCTACTCCAGAAAGTTCTTCAACGGGACCTCCAAAGTTGACATTAAAAGACCGAAGAGAAACATATGGAAACCGATATTTAAGCTTGTTCTACCGAGATGAGCCTGACATGCCTTTGATTGTTCCTAATCATTGGCTTGTTCCTGCTGTAGTTGCATTAACAGGGCTTGATCGCTGGATCCCATCCCAGGAGGCAAGGTTCTAG 3147 42.96 MIASSISSSSISFIVIFVPIFISISLCQFKPSSDHIVFQTLTPNYSPVDPFPSKNLTDGNRVLRKNYIVRFLQYREAQEHRVYLESRVRSGGWEWIERRNPASKYPTDFGLVSIEDSVRGELIEEIEELELVKDVNVDASHVRGLLTEDGGRVGAFVDGKKRPGKIFTSMSFKEGDGERYTAISNASNRWGRHLSMERSQVTSLFGADSLWAKGYTGSKVKMAIFDTGIRANHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVIAGGDEECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNMDVLNLSIGGPDYLDLPFVEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYNDHIASFSSRGMTTWEMPHGYGRVKPDIVAYGREIMGSKISTGCKSLSGTSVASPVVAGVVCLLVSVIPESQRKVILNPASMKQALVEGAAKLVGPNMYEQGAGRVDLLESYEILKSYQPRASIFPGVLDYTDCPYTWPFCRQPLYAGAMPIIFNATILNGMGVIGYVEGQPTWHPLDEEGNLLSIHFTYSKVIWPWTGYIALHMQIKEEGAQFSGEIEGNVTLTVYSPPSRGEKNRRISTCVLQLKLKVVPTPPRSKRILWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPLTCFDARQYGTLLLVDLEDEYFKEEIEKLRDDVMITGLGLAVFSEWYNVETMVKMRFFDDNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSIDGEQSRYASGTDIVRFPQGGYVHSFPFVDSSESGVAQSILTSNMNKVTFPILEVQKGELADFPILGLLEAGEGRITVYGDSNCLDSSHMVTNCYWLLRKILDFTSGNIRDPVLFTKFSKRNSPLYLENNKLPSRRSDVNFSLYSAVAGKELICRSDSRFEVWGTKGYSIQVRGRNRRLPGFPVIDLGRGLNSTPESSSTGPPKLTLKDRRETYGNRYLSLFYRDEPDMPLIVPNHWLVPAVVALTGLDRWIPSQEARF 1048
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18205003 18211303 + Lsi06G008690.1 Lsi06g00869 665599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00869 1048 ProSiteProfiles Serine proteases, subtilase domain profile. 193 487 - -
Lsi06g00869 1048 Gene3D Peptidase S8/S53 domain 194 485 IPR036852 GO:0004252|GO:0006508
Lsi06g00869 1048 Pfam Subtilase family 217 467 IPR000209 GO:0006508|GO:0008236
Lsi06g00869 1048 CDD Peptidases_S8_SKI-1_like 211 467 IPR034185 -
Lsi06g00869 1048 PANTHER MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE 62 891 - -
Lsi06g00869 1048 PANTHER PEPTIDASE S8 62 891 - -
Lsi06g00869 1048 PRINTS Subtilisin serine protease family (S8) signature 253 266 IPR015500 -
Lsi06g00869 1048 PRINTS Subtilisin serine protease family (S8) signature 217 236 IPR015500 -
Lsi06g00869 1048 PRINTS Subtilisin serine protease family (S8) signature 420 436 IPR015500 -
Lsi06g00869 1048 ProSitePatterns Serine proteases, subtilase family, serine active site. 421 431 IPR023828 -
Lsi06g00869 1048 ProSitePatterns Serine proteases, subtilase family, histidine active site. 257 267 IPR022398 -
Lsi06g00869 1048 SUPERFAMILY Subtilisin-like 203 482 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00869 Lsi-Chr6:18205003 Lsi10g00488 Lsi-Chr10:7018143 3.22E-07 dispersed
Lsi06g00869 Lsi-Chr6:18205003 Lsi04g01764 Lsi-Chr4:24883208 1.82E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00869 K08653 - csv:101222509 1948.33