Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00871 ATGTCGTCTCCGGCGACTAACATGACCTCACCCCCACCTCCAACCACCGGCGCACCACCACCAGAACCTCCGTCTGTCTCACCGCCGCCTCCCGACGCTGCCTCTCAGCCTCCACTTGTTTCATCTCCGCCGCCTCCGGACAGTACCACTCCATCTCCGCCGCCTCCGGACAGTACTACGCCTTCGAGCTCTTCCCCGCCGCCGCCTCCGTCTACCAACTCGACTGATCCCCCGCAGCTGCCGAGTCCGACGCCGCCGTCGGGTTCTGGTACACCTGCGAGTCCCGGAGGAAATCTGTCTCCGCCGTCTACCTCATCGTCGTCGGGTAATTCGGCCGGACTTGTGGCTGGAGTTGCCGTTGCTGGAGTAGTGGTAGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCGCCGCCACCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATGCTCCGCCGCCGCCGCCGTCAGATCATGTCGTGGGGGCAGTGCCGAAGCCGTCTCCTCCGCCATCATCACGGCCCCCATTGTCACCTCCGATTATAAACAGCAGCGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCTATTCCCTTGGGTTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGATTTTCAGAAGCCAATCTTCTTGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCAAATGGAAAGGAAGTTGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCTTTAGTGGGATATTGCATCACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACGACACATTGGAGTTCCACTTGCATGGGAAAGGACGACCCACCATGGATTGGCCAACGAGACTGAAAATTGCTCTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTGGCTAAGTTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTCGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACAGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGGTTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTCGATTGGGCAAGGCCATTACTATTACGGGCCACCGAAGATGGGGTGTATGATGGTCTAGTAGATCCAAAGCTGAGAGATAGCTACAACCACAACGAGATGGCTCGCATGGTTGCTTGCGCCGCCGCCTGTGTGCGCCATTCAGCAAGGCGCCGACCACGGATGAGTCAGGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGAATTCGGCCTGGACATAGCACTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCATTGGCGAGCCAGGAGTACGGCAGTGAGTACAGCGAGCCGACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGACAAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA 1854 51.29 MSSPATNMTSPPPPTTGAPPPEPPSVSPPPPDAASQPPLVSSPPPPDSTTPSPPPPDSTTPSSSSPPPPPSTNSTDPPQLPSPTPPSGSGTPASPGGNLSPPSTSSSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRKKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHAPPPPPSDHVVGAVPKPSPPPSSRPPLSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNDTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMVTGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDSYNHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTTKKESGGFNGSS 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18218127 18221203 - Lsi06G008710.1 Lsi06g00871 665601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00871 617 Gene3D Phosphorylase Kinase; domain 1 224 324 - -
Lsi06g00871 617 SMART serkin_6 249 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00871 617 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 7 603 - -
Lsi06g00871 617 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Lsi06g00871 617 Pfam Protein tyrosine and serine/threonine kinase 253 522 IPR001245 GO:0004672|GO:0006468
Lsi06g00871 617 MobiDBLite consensus disorder prediction 1 111 - -
Lsi06g00871 617 MobiDBLite consensus disorder prediction 574 599 - -
Lsi06g00871 617 MobiDBLite consensus disorder prediction 170 200 - -
Lsi06g00871 617 Gene3D Transferase(Phosphotransferase) domain 1 325 534 - -
Lsi06g00871 617 PRINTS Proline rich extensin signature 57 78 - -
Lsi06g00871 617 PRINTS Proline rich extensin signature 3 15 - -
Lsi06g00871 617 PRINTS Proline rich extensin signature 21 37 - -
Lsi06g00871 617 PRINTS Proline rich extensin signature 44 56 - -
Lsi06g00871 617 MobiDBLite consensus disorder prediction 7 90 - -
Lsi06g00871 617 ProSiteProfiles Protein kinase domain profile. 249 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00871 617 MobiDBLite consensus disorder prediction 145 220 - -
Lsi06g00871 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Lsi06g00871 617 MobiDBLite consensus disorder prediction 574 617 - -
Lsi06g00871 617 MobiDBLite consensus disorder prediction 91 111 - -
Lsi06g00871 617 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 7 603 - -
Lsi06g00871 617 SUPERFAMILY Protein kinase-like (PK-like) 224 522 IPR011009 -
Lsi06g00871 617 MobiDBLite consensus disorder prediction 201 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00871 Lsi-Chr6:18218127 Lsi04g00550 Lsi-Chr4:5048319 7.24E-165 dispersed
Lsi11g01430 Lsi-Chr11:22849358 Lsi06g00871 Lsi-Chr6:18218127 2.48E-72 dispersed
Lsi11g01627 Lsi-Chr11:24618672 Lsi06g00871 Lsi-Chr6:18218127 1.06E-91 dispersed
Lsi02g00542 Lsi-Chr2:4701911 Lsi06g00871 Lsi-Chr6:18218127 6.75E-64 transposed
Lsi04g00311 Lsi-Chr4:3137175 Lsi06g00871 Lsi-Chr6:18218127 5.12E-132 transposed
Lsi05g00788 Lsi-Chr5:11422414 Lsi06g00871 Lsi-Chr6:18218127 2.18E-65 transposed
Lsi05g01283 Lsi-Chr5:20620850 Lsi06g00871 Lsi-Chr6:18218127 8.99E-86 transposed
Lsi07g00207 Lsi-Chr7:2259547 Lsi06g00871 Lsi-Chr6:18218127 2.91E-07 transposed
Lsi07g00440 Lsi-Chr7:4686133 Lsi06g00871 Lsi-Chr6:18218127 5.97E-94 transposed
Lsi09g01380 Lsi-Chr9:21820796 Lsi06g00871 Lsi-Chr6:18218127 3.06E-68 transposed
Lsi10g01132 Lsi-Chr10:15583277 Lsi06g00871 Lsi-Chr6:18218127 2.39E-30 transposed
Lsi02g02327 Lsi-Chr2:29889142 Lsi06g00871 Lsi-Chr6:18218127 3.05E-75 transposed
Lsi11g00260 Lsi-Chr11:2621815 Lsi06g00871 Lsi-Chr6:18218127 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83720 PF07714 PK_Tyr_Ser-Thr 2.70E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00871 - - csv:101222748 870.922