Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g00871 | ATGTCGTCTCCGGCGACTAACATGACCTCACCCCCACCTCCAACCACCGGCGCACCACCACCAGAACCTCCGTCTGTCTCACCGCCGCCTCCCGACGCTGCCTCTCAGCCTCCACTTGTTTCATCTCCGCCGCCTCCGGACAGTACCACTCCATCTCCGCCGCCTCCGGACAGTACTACGCCTTCGAGCTCTTCCCCGCCGCCGCCTCCGTCTACCAACTCGACTGATCCCCCGCAGCTGCCGAGTCCGACGCCGCCGTCGGGTTCTGGTACACCTGCGAGTCCCGGAGGAAATCTGTCTCCGCCGTCTACCTCATCGTCGTCGGGTAATTCGGCCGGACTTGTGGCTGGAGTTGCCGTTGCTGGAGTAGTGGTAGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCGCCGCCACCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATGCTCCGCCGCCGCCGCCGTCAGATCATGTCGTGGGGGCAGTGCCGAAGCCGTCTCCTCCGCCATCATCACGGCCCCCATTGTCACCTCCGATTATAAACAGCAGCGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCTATTCCCTTGGGTTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGATTTTCAGAAGCCAATCTTCTTGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCAAATGGAAAGGAAGTTGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCTTTAGTGGGATATTGCATCACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACGACACATTGGAGTTCCACTTGCATGGGAAAGGACGACCCACCATGGATTGGCCAACGAGACTGAAAATTGCTCTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTGGCTAAGTTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTCGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACAGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGGTTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTCGATTGGGCAAGGCCATTACTATTACGGGCCACCGAAGATGGGGTGTATGATGGTCTAGTAGATCCAAAGCTGAGAGATAGCTACAACCACAACGAGATGGCTCGCATGGTTGCTTGCGCCGCCGCCTGTGTGCGCCATTCAGCAAGGCGCCGACCACGGATGAGTCAGGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGAATTCGGCCTGGACATAGCACTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCATTGGCGAGCCAGGAGTACGGCAGTGAGTACAGCGAGCCGACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGACAAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA | 1854 | 51.29 | MSSPATNMTSPPPPTTGAPPPEPPSVSPPPPDAASQPPLVSSPPPPDSTTPSPPPPDSTTPSSSSPPPPPSTNSTDPPQLPSPTPPSGSGTPASPGGNLSPPSTSSSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRKKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHAPPPPPSDHVVGAVPKPSPPPSSRPPLSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNDTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMVTGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDSYNHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTTKKESGGFNGSS | 617 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 18218127 | 18221203 | - | Lsi06G008710.1 | Lsi06g00871 | 665601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g00871 | 617 | Gene3D | Phosphorylase Kinase; domain 1 | 224 | 324 | - | - | |
Lsi06g00871 | 617 | SMART | serkin_6 | 249 | 498 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00871 | 617 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 7 | 603 | - | - | |
Lsi06g00871 | 617 | ProSitePatterns | Protein kinases ATP-binding region signature. | 255 | 277 | IPR017441 | GO:0005524 | |
Lsi06g00871 | 617 | Pfam | Protein tyrosine and serine/threonine kinase | 253 | 522 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 1 | 111 | - | - | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 574 | 599 | - | - | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 170 | 200 | - | - | |
Lsi06g00871 | 617 | Gene3D | Transferase(Phosphotransferase) domain 1 | 325 | 534 | - | - | |
Lsi06g00871 | 617 | PRINTS | Proline rich extensin signature | 57 | 78 | - | - | |
Lsi06g00871 | 617 | PRINTS | Proline rich extensin signature | 3 | 15 | - | - | |
Lsi06g00871 | 617 | PRINTS | Proline rich extensin signature | 21 | 37 | - | - | |
Lsi06g00871 | 617 | PRINTS | Proline rich extensin signature | 44 | 56 | - | - | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 7 | 90 | - | - | |
Lsi06g00871 | 617 | ProSiteProfiles | Protein kinase domain profile. | 249 | 528 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 145 | 220 | - | - | |
Lsi06g00871 | 617 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 369 | 381 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 574 | 617 | - | - | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 91 | 111 | - | - | |
Lsi06g00871 | 617 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 7 | 603 | - | - | |
Lsi06g00871 | 617 | SUPERFAMILY | Protein kinase-like (PK-like) | 224 | 522 | IPR011009 | - | |
Lsi06g00871 | 617 | MobiDBLite | consensus disorder prediction | 201 | 220 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00871 | Lsi-Chr6:18218127 | Lsi04g00550 | Lsi-Chr4:5048319 | 7.24E-165 | dispersed | |
Lsi11g01430 | Lsi-Chr11:22849358 | Lsi06g00871 | Lsi-Chr6:18218127 | 2.48E-72 | dispersed | |
Lsi11g01627 | Lsi-Chr11:24618672 | Lsi06g00871 | Lsi-Chr6:18218127 | 1.06E-91 | dispersed | |
Lsi02g00542 | Lsi-Chr2:4701911 | Lsi06g00871 | Lsi-Chr6:18218127 | 6.75E-64 | transposed | |
Lsi04g00311 | Lsi-Chr4:3137175 | Lsi06g00871 | Lsi-Chr6:18218127 | 5.12E-132 | transposed | |
Lsi05g00788 | Lsi-Chr5:11422414 | Lsi06g00871 | Lsi-Chr6:18218127 | 2.18E-65 | transposed | |
Lsi05g01283 | Lsi-Chr5:20620850 | Lsi06g00871 | Lsi-Chr6:18218127 | 8.99E-86 | transposed | |
Lsi07g00207 | Lsi-Chr7:2259547 | Lsi06g00871 | Lsi-Chr6:18218127 | 2.91E-07 | transposed | |
Lsi07g00440 | Lsi-Chr7:4686133 | Lsi06g00871 | Lsi-Chr6:18218127 | 5.97E-94 | transposed | |
Lsi09g01380 | Lsi-Chr9:21820796 | Lsi06g00871 | Lsi-Chr6:18218127 | 3.06E-68 | transposed | |
Lsi10g01132 | Lsi-Chr10:15583277 | Lsi06g00871 | Lsi-Chr6:18218127 | 2.39E-30 | transposed | |
Lsi02g02327 | Lsi-Chr2:29889142 | Lsi06g00871 | Lsi-Chr6:18218127 | 3.05E-75 | transposed | |
Lsi11g00260 | Lsi-Chr11:2621815 | Lsi06g00871 | Lsi-Chr6:18218127 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83720 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-46 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g00871 | - | - | csv:101222748 | 870.922 |