Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00887 ATGGACCATAATAATCACTGCAATGGAAATTCTGATTCCCATCACAAAATACCTAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCCGTTTCAGGGAAAACTTTCGAGACCATAGATCCGAGAACCGAGGAGGTTATCGCCACGGTGGCTGCCGGGGACAAAGATGACGTCGATCTGGCCGTGAAAGCCGCCCGTGAGGCATTCGATCATGGCCCTTGGCCTCGCATGTCCGGCGCCGAGAGGGCGAGGATTATGACAAAACTAGCGGAATTGATAGATGAAAACATGGAGGAACTGGCAGCGTTGGATACGATCGACGCTGGAAAATCGTTTCTATTGGGAAAAATTGTGGATATACCCGGGGCTGCAAATACGCTACGGTACTACGCAGGTGCAGCGGATAAAATCCACGGCGAAGTATTGAAAATGGCAAAACCTCTTTACGGTTACACGTTACTGGAGCCTGTTGGAGTGGTGGGCCACATCATACCATGGAATTTTCCGACCACCATGTTCTGGTTAAAAGTCAGCCCGGCGTTAGCCGCCGGCTGCACCATGATCGTCAAGCCCGCCGAACAGACGCCTCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAACTCGCTGGTATACCAGATGGAGTACTCAACGTGGTGACTGGATATGGACCGACGGCCGGATCAGCCATTGCGTCCCACATGGACATTGACAAGGTGAGCTTCACAGGATCAACAAAGGTGGGAAGGTTGGTAATGCAGGCAGCAAGTGCCAGTAATCTGAAGCAAGTGTCCTTAGAATTAGGAGGCAAATCACCCCTTCTAGTCTTTGATGATGCCAATCTCGACAAAGCCGTTGATCTTGCTCTCCTTGCCATTTTTTATAATAAGGGAGAAATTTGTGTGGCTGGCTCCCGAGTCTTGGTTCAAGAAGGGATTTACGATGAATTTGTAAAAAAGATTACCGAAAAGGCCAAATCTTGGGTTGTGGGAGACCCTTTTGATCCTAAAGTTAAATATGGACCTCAGGTGGACAAAAAACAATTGGATAAAATTCTGAAATACATAGAACACGGAAGACTCACTGATTGCCCAGGACGAAATATTCGGCCCAGTCCTCTCAGTCATAAAATTCAAGTAAACTAA 1155 47.79 MDHNNHCNGNSDSHHKIPKIKFTKLFINGQFVDSVSGKTFETIDPRTEEVIATVAAGDKDDVDLAVKAAREAFDHGPWPRMSGAERARIMTKLAELIDENMEELAALDTIDAGKSFLLGKIVDIPGAANTLRYYAGAADKIHGEVLKMAKPLYGYTLLEPVGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGPTAGSAIASHMDIDKVSFTGSTKVGRLVMQAASASNLKQVSLELGGKSPLLVFDDANLDKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKAKSWVVGDPFDPKVKYGPQVDKKQLDKILKYIEHGRLTDCPGRNIRPSPLSHKIQVN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18456912 18460232 + Lsi06G008870.1 Lsi06g00887 665617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00887 384 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Lsi06g00887 384 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 8 272 IPR016162 GO:0016491
Lsi06g00887 384 Pfam Aldehyde dehydrogenase family 31 363 IPR015590 GO:0016491
Lsi06g00887 384 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Lsi06g00887 384 SUPERFAMILY ALDH-like 17 363 IPR016161 GO:0016491
Lsi06g00887 384 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 6 363 - -
Lsi06g00887 384 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 6 363 - -
Lsi06g00887 384 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 369 IPR016163 GO:0016620
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00887 Lsi-Chr6:18456912 Lsi06g01544 Lsi-Chr6:25796226 7.13E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00887 K12355 - csv:101219029 647.121