Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00887 ATGGACCATAATAATCACTGCAATGGAAATTCTGATTCCCATCACAAAATACCTAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCCGTTTCAGGGAAAACTTTCGAGACCATAGATCCGAGAACCGAGGAGGTTATCGCCACGGTGGCTGCCGGGGACAAAGATGACGTCGATCTGGCCGTGAAAGCCGCCCGTGAGGCATTCGATCATGGCCCTTGGCCTCGCATGTCCGGCGCCGAGAGGGCGAGGATTATGACAAAACTAGCGGAATTGATAGATGAAAACATGGAGGAACTGGCAGCGTTGGATACGATCGACGCTGGAAAATCGTTTCTATTGGGAAAAATTGTGGATATACCCGGGGCTGCAAATACGCTACGGTACTACGCAGGTGCAGCGGATAAAATCCACGGCGAAGTATTGAAAATGGCAAAACCTCTTTACGGTTACACGTTACTGGAGCCTGTTGGAGTGGTGGGCCACATCATACCATGGAATTTTCCGACCACCATGTTCTGGTTAAAAGTCAGCCCGGCGTTAGCCGCCGGCTGCACCATGATCGTCAAGCCCGCCGAACAGACGCCTCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAACTCGCTGGTATACCAGATGGAGTACTCAACGTGGTGACTGGATATGGACCGACGGCCGGATCAGCCATTGCGTCCCACATGGACATTGACAAGGTGAGCTTCACAGGATCAACAAAGGTGGGAAGGTTGGTAATGCAGGCAGCAAGTGCCAGTAATCTGAAGCAAGTGTCCTTAGAATTAGGAGGCAAATCACCCCTTCTAGTCTTTGATGATGCCAATCTCGACAAAGCCGTTGATCTTGCTCTCCTTGCCATTTTTTATAATAAGGGAGAAATTTGTGTGGCTGGCTCCCGAGTCTTGGTTCAAGAAGGGATTTACGATGAATTTGTAAAAAAGATTACCGAAAAGGCCAAATCTTGGGTTGTGGGAGACCCTTTTGATCCTAAAGTTAAATATGGACCTCAGGTGGACAAAAAACAATTGGATAAAATTCTGAAATACATAGAACACGGAAGACTCACTGATTGCCCAGGACGAAATATTCGGCCCAGTCCTCTCAGTCATAAAATTCAAGTAAACTAA 1155 47.79 MDHNNHCNGNSDSHHKIPKIKFTKLFINGQFVDSVSGKTFETIDPRTEEVIATVAAGDKDDVDLAVKAAREAFDHGPWPRMSGAERARIMTKLAELIDENMEELAALDTIDAGKSFLLGKIVDIPGAANTLRYYAGAADKIHGEVLKMAKPLYGYTLLEPVGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGPTAGSAIASHMDIDKVSFTGSTKVGRLVMQAASASNLKQVSLELGGKSPLLVFDDANLDKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKAKSWVVGDPFDPKVKYGPQVDKKQLDKILKYIEHGRLTDCPGRNIRPSPLSHKIQVN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18456912 18460232 + Lsi06G008870.1 Lsi06g00887 665617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00887 384 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Lsi06g00887 384 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 8 272 IPR016162 GO:0016491
Lsi06g00887 384 Pfam Aldehyde dehydrogenase family 31 363 IPR015590 GO:0016491
Lsi06g00887 384 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Lsi06g00887 384 SUPERFAMILY ALDH-like 17 363 IPR016161 GO:0016491
Lsi06g00887 384 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 6 363 - -
Lsi06g00887 384 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 6 363 - -
Lsi06g00887 384 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 369 IPR016163 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00887 K12355 REF1; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] - csv:101219029 647.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00887 Lsi-Chr6:18456912 Lsi06g01544 Lsi-Chr6:25796226 7.13E-125 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00887 . 4 363 Aldehyde Dehydrogenase Gene Family AT3G24503 72.6 2.4e-152 535.8
Lsi06g01544 . 73 538 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 5.1e-147 518.1
Lsi06g01544 . 1 538 Aldehyde Dehydrogenase Gene Family AT3G48000 74.2 4.5e-242 833.9
Lsi11g00444 . 3 570 Aldehyde Dehydrogenase Gene Family AT3G48000 64.8 9.2e-211 729.9
Lsi06g00887 . 19 362 Aldehyde Dehydrogenase Gene Family AT3G48000 55.2 4.6e-109 392.1
Lsi06g01544 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 70.2 7.6e-157 550.4
Lsi11g00444 . 3 424 Aldehyde Dehydrogenase Gene Family AT1G23800 61.8 1.8e-137 486.1
Lsi06g00887 . 19 347 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 3.1e-102 369.0
Lsi04g02400 . 66 543 Aldehyde Dehydrogenase Gene Family AT4G34240 64.2 9.9e-181 630.2
Lsi04g02401 . 15 445 Aldehyde Dehydrogenase Gene Family AT4G34240 55.7 3.0e-145 512.3
Lsi04g02400 . 131 541 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 2.3e-177 618.6
Lsi04g02401 . 75 443 Aldehyde Dehydrogenase Gene Family AT1G44170 63.0 4.8e-146 514.6
Lsi07g00222 . 89 503 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 5.7e-115 411.4
Lsi07g00222 . 29 504 Aldehyde Dehydrogenase Gene Family AT4G36250 62.2 4.3e-183 637.9
Lsi10g01510 . 37 526 Aldehyde Dehydrogenase Gene Family AT1G79440 70.2 2.2e-204 708.8
Lsi03g00690 . 12 485 Aldehyde Dehydrogenase Gene Family AT2G14170 80.1 8.3e-229 790.0
Lsi01g00821 . 177 688 Aldehyde Dehydrogenase Gene Family AT2G14170 61.4 2.2e-181 632.5
Lsi06g01516 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 82.0 7.6e-252 866.3
Lsi06g01516 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 82.5 1.7e-254 875.2
Lsi11g00399 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 2.2e-267 917.9
Lsi02g00309 . 21 549 Aldehyde Dehydrogenase Gene Family AT5G62530 75.7 2.4e-246 848.2
Lsi09g01486 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 1.3e-277 952.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003336 2 1 7 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 0 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g00887 Lsi_Chr06 FPKM 4.007198 3.677486 5.539577 4.950219 6.722658 5.03665 8.144814 2.992124 3.895371 3.391644